Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2703 |
Symbol | |
ID | 4077010 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2845236 |
End bp | 2846147 |
Gene Length | 912 bp |
Protein Length | 303 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638008028 |
Product | LysR family transcriptional regulator |
Protein accession | YP_614697 |
Protein GI | 99082543 |
COG category | [K] Transcription |
COG ID | [COG0583] Transcriptional regulator |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 33 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.637197 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCTTATA TGGAGAGCCT GCGCCTGTTC TGCCGTGTGG TGGAGCTGGG CAGTATCACA TCGGGAGGGC GCGACGTGCG CCTGACGCCG GCAGTGGCCA GCAAACGCAT CAAGGAGCTG GAGGAACATC TTGGCGTGCG GCTCTTCAAT CGCACCACGC GATCGCTGAC GCCGACCGAA GCGGGTAAGC GGTTTTACCG CGAGGCCTTG CGCATCCTTG ACGTGGTCGA AGAGGCCGAG AGCGTTGTGG CACAGTTCTC CGGGCGGCCA CGCGGGACTC TGAAAATCAC CGCACCTCTG GCAGCTGGAC GGCGCATAAT CGCCCCGTTA GTGCCTGATT TTGTCGATCG GCACCCCGAG ATCGACGTGC AGATGCGGAT GTCGGATCGT CGGGTCGATA TTCTGGCAGA AGGTCTGGAC CTGGCCTTTT TTGTCGGTAC GCCGAGCGAC TCCAGCCTGA AGATGCGCAA GATCGCAAGC GTTGACCGGG TGCTCTGTGC CTCGCCGCGC TATCTGGAAC GCCATGGCAT CCCTCATGTG CCGCAGGATC TGATGGGAAA ACACAACTGC CTGCTGCTGC GCTACCCCCG TTCGCCAGAA TATTTTTGGA CCTTGAACAC AGGCTCTGGG TTTCGAAAAT TCGAAGTCAG CGGCAAATAC GATGCAGACG ACAGCGAGGT TCTGTTGAAT TGGGCGCTGG ATCATCGCGG CATCGTCAAC AAACCACGAT TTGAGGTGGC AGAGCATCTG CGCTCTGGTG CGCTGGTCGA GATCCTGCCG GAGGCGCGCC CGATGGCGGC AACTTTCGGC TGCCTTTATC CGCACAAGAA ACTGCAGGAT CCAAAAGTGC GCCTGCTGGT GGATTTCATC ACCGAACGCG GACAGTCCTT GCTGGACGCG CTGGTCGGAT AA
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Protein sequence | MAYMESLRLF CRVVELGSIT SGGRDVRLTP AVASKRIKEL EEHLGVRLFN RTTRSLTPTE AGKRFYREAL RILDVVEEAE SVVAQFSGRP RGTLKITAPL AAGRRIIAPL VPDFVDRHPE IDVQMRMSDR RVDILAEGLD LAFFVGTPSD SSLKMRKIAS VDRVLCASPR YLERHGIPHV PQDLMGKHNC LLLRYPRSPE YFWTLNTGSG FRKFEVSGKY DADDSEVLLN WALDHRGIVN KPRFEVAEHL RSGALVEILP EARPMAATFG CLYPHKKLQD PKVRLLVDFI TERGQSLLDA LVG
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