Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_2565 |
Symbol | |
ID | 4076696 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 2707049 |
End bp | 2709181 |
Gene Length | 2133 bp |
Protein Length | 710 aa |
Translation table | 11 |
GC content | 60% |
IMG OID | 638007889 |
Product | metal dependent phosphohydrolase |
Protein accession | YP_614559 |
Protein GI | 99082405 |
COG category | [K] Transcription [T] Signal transduction mechanisms |
COG ID | [COG0317] Guanosine polyphosphate pyrophosphohydrolases/synthetases |
TIGRFAM ID | [TIGR00691] (p)ppGpp synthetase, RelA/SpoT family |
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Plasmid Coverage information |
Num covering plasmid clones | 5 |
Plasmid unclonability p-value | 0.00145552 |
Plasmid hitchhiking | Yes |
Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
Num covering fosmid clones | 2 |
Fosmid unclonability p-value | 0.00000902572 |
Fosmid Hitchhiker | Yes |
Fosmid clonability | hitchhiker |
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Sequence |
Gene sequence | ATGACATCTG CTGATGACCT GATTTCCCTG GTCCGCGACT ACAACCCCAA AACGAATGAG CAGCGCCTGC GCGACGCCTA CGCCTTTGGC GAGGAAATGC ATGACGGGCA GTTTCGCCAT TCCGGGGAAC CCTATTTCAC ACACCCTGTC GCAGTCGCCG CAATCCTGAC CGAACAGCGG CTCGATGATG CAACCATCAT CACGGCCCTG CTGCACGACA CGATCGAGGA CACCAAGGCC TCTTACGAGG AAGTGTCGTT GCGTTTTGGC GAAGAAGTGG CGATGCTGGT CGATGGTGTC ACGAAGCTGA CGAACCTGCA GCTCTCGTCG CGCGAAACCA AACAGGCGGA GAACTTTCGC AAGCTGTTTA TGGCGATGTC GAAGGATCTT CGGGTCATTC TCGTCAAGCT GGCCGACCGA CTGCACAACA TGCGCACCAT TCGTGCCATG CGCCCGGAAA AACAGGCGCA AAAAGCCCGC GAAACCATGG ACATCTACGC CCCCCTCGCG GGGCGGATGG GGATGCAGTG GATGCGCGAG GAACTGGAAG ACCTGGCCTT CAAGGTGCTG AACCCCGAAG GTCGCCAGTC GATTATCCGC CGCTTTGTGA CCCTGCAGCG CGAGACCGGG GACGTGATCC ATCGGATTAC CGGCGACATG AGGCTGGAGT TGGAGAAGGC GGGCGTTGAG GCCGAAGTCT TTGGCCGTGC AAAGAAACCC TATTCGATCT GGCGCAAGAT GCAGGAAAAG GATCAGGGGT TCTCGCGTCT CTCGGACATT TACGGCTTTC GCGTGATCAC GCGCTCCGAA GAGGACTGCT ATCGCACGCT TGGCACGATC CACCAGCGCT GGCGGGCGGT GCCGGGGCGG TTCAAGGATT ATATCAGCCA GCCCAAATCC AACGGCTATC GCTCGATCCA CACCACGGTG TCGGGACGCG ACGGCAAGCG GGTCGAGGTG CAGATCCGCA CCCGGCAGAT GCATGATGTT GCGGAATCGG GTGTGGCGGC GCATTGGTCC TATCGCGATG GTGTGCGCAC CGAGAACCCC TTTGCCGTTG ATCCCGCCAA GTGGATCGCC TCGCTCACTG AACAGTTTGA TGGTGAAGAC GATCACGACG AATTCCTCGA AGCGGTGAAG CTCGAGATGT ATTCGGATCA GGTGTTCTGC TTCACGCCCA AGGGCGACGT GATCAAGCTG CCCAAGGGTG CCACACCGAT TGATTTTGCC TATGCGATCC ACACGCGTAT CGGCCACGCC TGTGTCGGCG CCAAGGTAGA CGGCATCCGG GTGCCGCTCT GGACCCGGCT CAGAAATGGT CAGTCGGTGG AAGTGATCAC CGCCGAAGGC CAGACTCCGC AGGTCAGCTG GCTGGAAATT GCCACCACTG GCAAGGCGCG CACGGCTATT CGCCGGGCCC TACGGGAGGC GGACCGGGAA CGGTTTGTAA AACTCGGCCA CGAGCTGGCG CGTTCCGCGT TTGAGCACAT GAACAAGAAG GCCACCGACA AGGCGCTGGA AACTGCGGCC CGCGCGTTGC GGGTCAGTGA TGTGACCGAA TTGCTGGCGC GCCTCGGGGC TGCGGTGATC ACCGCGCATG ACGTGGTGCA GGCCGTCTAC CCCGAGCTTA CCGATAAGGA CGGCGAGGAA GTCTCGCCCC GGCGCGCCGT GATCGGCCTG GAACCGGGCC AGAAGTTCGA ACGCGCTTCC TGCTGCGAGC CGCTGCCGGG AGAGCGCATC ATCGGGATCA CTTCGCGTGG GCAGGGTGTC GTGGTACACT CGGCGGACTG TGACCGGCTC GGAGAGTTCG AGGACCAGAT GGACCGGTGG GTCGATGTGC ATTGGCACTC GGGCACCCAT CCCGCTGTCT ATGGCGTCAC ACTTGAATTG ACGATCGGGA ACGACGCAGG CGTTCTGGGG CGCATCTGTA CGTTGATCGG CGAAAAGAAA GCCAACATTT CGAACCTTGA ATTCAAGGAT CGGAAACCTG ACTTTTACCG CTTGATGATC AATGTGGAGC TGCGCGATGT GGAACAGCTG CATTCGCTGA TACTGATGTT GGAAGCTGAA AGCGACGTCG CCGCGGTCGC GCGCTACCGG GAAACGCCTG GAACGCAAGC CCGCACGATC TAG
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Protein sequence | MTSADDLISL VRDYNPKTNE QRLRDAYAFG EEMHDGQFRH SGEPYFTHPV AVAAILTEQR LDDATIITAL LHDTIEDTKA SYEEVSLRFG EEVAMLVDGV TKLTNLQLSS RETKQAENFR KLFMAMSKDL RVILVKLADR LHNMRTIRAM RPEKQAQKAR ETMDIYAPLA GRMGMQWMRE ELEDLAFKVL NPEGRQSIIR RFVTLQRETG DVIHRITGDM RLELEKAGVE AEVFGRAKKP YSIWRKMQEK DQGFSRLSDI YGFRVITRSE EDCYRTLGTI HQRWRAVPGR FKDYISQPKS NGYRSIHTTV SGRDGKRVEV QIRTRQMHDV AESGVAAHWS YRDGVRTENP FAVDPAKWIA SLTEQFDGED DHDEFLEAVK LEMYSDQVFC FTPKGDVIKL PKGATPIDFA YAIHTRIGHA CVGAKVDGIR VPLWTRLRNG QSVEVITAEG QTPQVSWLEI ATTGKARTAI RRALREADRE RFVKLGHELA RSAFEHMNKK ATDKALETAA RALRVSDVTE LLARLGAAVI TAHDVVQAVY PELTDKDGEE VSPRRAVIGL EPGQKFERAS CCEPLPGERI IGITSRGQGV VVHSADCDRL GEFEDQMDRW VDVHWHSGTH PAVYGVTLEL TIGNDAGVLG RICTLIGEKK ANISNLEFKD RKPDFYRLMI NVELRDVEQL HSLILMLEAE SDVAAVARYR ETPGTQARTI
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