| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2479 |
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| Symbol | |
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| ID | 4076844 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2618120 |
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| End bp | 2619883 |
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| Gene Length | 1764 bp |
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| Protein Length | 587 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638007803 |
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| Product | Type I secretion system ATPase, PrtD |
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| Protein accession | YP_614473 |
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| Protein GI | 99082319 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4618] ABC-type protease/lipase transport system, ATPase and permease components |
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| TIGRFAM ID | [TIGR01842] type I secretion system ABC transporter, PrtD family |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 9 |
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| Fosmid unclonability p-value | 0.0339809 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACAACA AATTTGCAAA CGCGGGACGC GCAGAGCTTC TGGCAGTACG CCGTCAAAGC
CGCAAACTTT ATTGGACGGT TGCTCTGTTC AGCGCATTCG TCAACATGCT GATGCTGACC
GGACCGCTCT ATATGATGCA GGTCTATGAT CGGGTTTTGG GCAGCCGATC TGAGGCCACG
CTGCTGGCGC TCACTCTGTT GGTGATTTTC CTCTATGCGA TGATGGGGCT CTTGGACGCC
GTGCGCGGGC GGATCATGCG TCGCGTCGCG GCGCGGTTTC AGGCGGCGCT GGACAAGCGT
GTGTTTGATG CAATGATCCG GCGCTCGGCG ATTGCCAATG ATCCCGAGGC GCAGACGGGC
CTGAGCGATC TGGAGAGCGT GCAGAAATTT ATTGCTTCTC CCGGTCTCAT GGCCGCATTC
GATCTGCCGT GGACCCCAAT CTTCTTGGCG GGGATTGCCT TGTTTCACCC GTGGCTGGGG
ATGCTGGCGA TTGGAGGTGG CAGCGTGCTG ATCGCGATTG CGCTGCTCAA TCAGCTCTTG
AGCGCGGCCC CCAGCAAAGC CGCGATGGTC AGTGGTCATC ACGCGACCCT TCAATCTGAA
GAGATCCGCA CCGAGGCGGA GATGATTCAG GCCATGGGCA TGCGCGAATC CGCATTCCAG
CGTTGGAGAC ACGCTCGAGA CAAGGCGCTG GCGGATTACG TTGTCGCGTC GGATGTCACC
GGGAGCTTCA GCACTGTGAC CAAAACCCTG CGCCTGTTCT TGCAATCGGC GATGCTTGGT
CTTGGCGCTT ATTTGACGCT TCAGGGCGAG GTAAGTGCGG GCGCAATGAT CGCGGGTTCG
ATCCTTTTGG GACGTGCGCT CTCACCGATT GAGGTCGGTC TGGGGCAGTG GCCTCTGGTG
CAGCGCGCAC GCAAGGGCTG GAGCAATCTT GAAACCCTCC TGAGCAAGAC CCCGCCAGAG
CCTATTCGGA CAGCCTTGCC AAAGCCCAAG GCGAAACTGG AGGTCGAGGC GGTCGCCGCC
ACCGCCCCCG GCGAGACGCG CCCGTTGCTG CGCAACGTGA CTTTTCGGGT GGAGCCGGGC
GAAGCCATCG GCGTGATCGG CCCCTCGGGA TCCGGCAAGT CTACCCTTGC GCGCGTGTTG
ACCGGGGCGT GGCGTGCGGC GGCTGGGACC GTGCGCCTGG ATGGCGCAGC GCTGTCACAA
TACGATCCCT CGGTGCTCGG GGATCACATC GGGTATCTGC CGCAACGGGT AGAGCTCTTT
GAAGGTACGA TCGCGCAGAA CATTGCCCGC CTCGCCTCGT CCCCCGACGC GCAGGCGGTG
GTCGAGGCCG CGAAGGCCGC TGCGGCGCAT GAGATGATCG TGAGCCTGCC CGACGGCTAT
GACACCAAGG TGCGCTCTGG CGGTGGTCGC CTCTCTGGCG GTCAGATGCA GCGCATCGGC
CTGGCTCGGG CCCTTTATGG CGACCCGGTG ATCCTGATCC TGGATGAGCC GAACTCCAAT
CTAGACAATG ATGGCTCTGT TGCCTTGAAT AATGCAATCA AGAGGCTGAA ATCACATGGG
AAATCTGTTC TCATCATGGC CCATCGTCCC GCTGCCATTC AGGAATGCGA CAAGCTTTTG
GTCGTGGAGC AAGGCGCGAT GGTGGCCTTT GGCCCCAAAG ATGAGGTGCT GCGGAAAATG
GTTGCAAATC ACCGCGAACT GCAACCCTCT GGTGCGCGCC GCCCGGCTCA GGGAGCAAAT
GCGCTGAAGG GAGGCCCTCG ATGA
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| Protein sequence | MNNKFANAGR AELLAVRRQS RKLYWTVALF SAFVNMLMLT GPLYMMQVYD RVLGSRSEAT
LLALTLLVIF LYAMMGLLDA VRGRIMRRVA ARFQAALDKR VFDAMIRRSA IANDPEAQTG
LSDLESVQKF IASPGLMAAF DLPWTPIFLA GIALFHPWLG MLAIGGGSVL IAIALLNQLL
SAAPSKAAMV SGHHATLQSE EIRTEAEMIQ AMGMRESAFQ RWRHARDKAL ADYVVASDVT
GSFSTVTKTL RLFLQSAMLG LGAYLTLQGE VSAGAMIAGS ILLGRALSPI EVGLGQWPLV
QRARKGWSNL ETLLSKTPPE PIRTALPKPK AKLEVEAVAA TAPGETRPLL RNVTFRVEPG
EAIGVIGPSG SGKSTLARVL TGAWRAAAGT VRLDGAALSQ YDPSVLGDHI GYLPQRVELF
EGTIAQNIAR LASSPDAQAV VEAAKAAAAH EMIVSLPDGY DTKVRSGGGR LSGGQMQRIG
LARALYGDPV ILILDEPNSN LDNDGSVALN NAIKRLKSHG KSVLIMAHRP AAIQECDKLL
VVEQGAMVAF GPKDEVLRKM VANHRELQPS GARRPAQGAN ALKGGPR
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