| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2414 |
|---|
| Symbol | |
|---|
| ID | 4076740 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2554164 |
|---|
| End bp | 2554964 |
|---|
| Gene Length | 801 bp |
|---|
| Protein Length | 266 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007736 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | YP_614408 |
|---|
| Protein GI | 99082254 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | [TIGR03083] uncharacterized Actinobacterial protein TIGR03083
[TIGR03084] conserved hypothetical protein TIGR03084 |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 16 |
|---|
| Plasmid unclonability p-value | 0.096621 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCAGCAAG CCAGCGATTT TCTTGAGGAA AGCCAGATCT TGGCGCGTTG CCTTGAGGCC
GCGCCGGATC GCATCTTTGC CACGAAAACG CAGTTCAAAT CCTGGACCGT CGACGACATC
CTTGGTCATC TTCATTTCTT CAATGCCGCC GCCGAAGCTG CCCTGGCCGG AGCGGACGCG
TTTGACGCGA TGATGGCTCC TGCCATGGAG AGGTTCTCCT CGGGGGGCAA GATCCTCGAT
TTGCAGTTTC CTTGGCTTGG GGATCTGCAA GGGCGCGCCC TGTTCGACGC CTGGCAACAG
GGCGCCGCGC GCGTCGCAGA GGCCTATGAA GCGGCTGATC CCAAAGCGCG GGTCAAATGG
CTTGGCCCAG AAATGAGCGC CCTGAGCTCC ATCACGGCAC GACAGATGGA AACCTGGTCA
CATGGACAGG CAATTTTTGA TCTCCTTGGC GAGACCCGTC ACGAGAGCGA TCGCATCCGC
AATATCGCGC ATCTTGGGGT CGCTACGTTC GGGTGGAGTT TTCGGGTCTG GGGACAGGAC
GTCCCAGAGC CTGCGCCCTA TGTGGAGCTG ACCGCCCCTT CTGGTGCGAT CTGGAGCTGG
AATGCGCCGC AGGAAGCCAA TCGCGTCACC GGGTCCGCGG TCGAGTTTGC TCAAATCGTC
GCGCAGACGC GCAACTGGAA GGACACTGCC GTTAAAGCAA ACTCGGAGGT GGCGCAGCGT
TGGATGCAGC AGGCGCAGTG TTTTGCTGGG CCACCAAACT CTCCCCCTGC ACCGGGCACG
CGTTTCTGCG CCCCAAGCTG A
|
|---|
| Protein sequence | MQQASDFLEE SQILARCLEA APDRIFATKT QFKSWTVDDI LGHLHFFNAA AEAALAGADA
FDAMMAPAME RFSSGGKILD LQFPWLGDLQ GRALFDAWQQ GAARVAEAYE AADPKARVKW
LGPEMSALSS ITARQMETWS HGQAIFDLLG ETRHESDRIR NIAHLGVATF GWSFRVWGQD
VPEPAPYVEL TAPSGAIWSW NAPQEANRVT GSAVEFAQIV AQTRNWKDTA VKANSEVAQR
WMQQAQCFAG PPNSPPAPGT RFCAPS
|
|---|
| |