| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2349 |
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| Symbol | |
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| ID | 4076468 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2470318 |
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| End bp | 2471775 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007671 |
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| Product | type II secretion system protein E |
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| Protein accession | YP_614343 |
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| Protein GI | 99082189 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG4962] Flp pilus assembly protein, ATPase CpaF |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.413673 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTTCCA AGTACAAAAA GCAATCCTCT GCGCCTGCTG CCCCCGCAGC GGCCCCTGCC
GCGGCTCCAA AACCTGCCGC CAGCCCCAGC GCACCTGCCG CCGGGGTCAA GGCCGTTCTG
CGCCGTCCCG ACCAGCGCAA CGCAGCTGCC GCCGCACCGC AGGACCGTGA GCGCAAGCGC
AAGGAACGGC TGAGCGAGAT CAAAATTGAT CTGCACAGAG AGCTTTTGGA GAACCTCAAC
CTCGCCGCGC TTGAAAAAGC CTCTGAATCT GAGCTGCGCA GCGAGATCGC AGCCATCTCC
AATGAGGTGC TTCAGGAAAA AAGCATCGTT TTGAACCGCG AAGACCGTCA GCAGCTCATG
AAAGAGCTGT ATGACGAGGT CACGGGTCTT GGCCCGCTCG AAGCGCTTTT GAAGGATGAT
ACCGTTTCCG ATATTCTGGT GAACGGCCCC CAGCAGATCT TTATCGAACG TGCAGGTAAG
CTCGAACTGA GCGACATTAC CTTCAAGGAT GAAAAGCACC TGATGCGGAT CATCGACAAG
ATCGTCTCGG CTGTGGGGCG TCGAGTTGAT GAATCAAATC CCTATGTGGA TGCCCGTCTC
CAGGATGGGT CGCGCTTTAA TGCCATGGTG CCGCCGATTG CGGTAGATGG CTCACTGGTG
TCGATCCGGA AATTCAAAAA GGACAAGTTA CAGATCGACG ATCTGGTAAA CTTTGGTGCC
TTCACCGAAG AAATGGCCGC CTATCTTCAG GCTGCTGTCT CGACCCGTCT GAATGTCATC
GTGTCCGGCG GGACGGGCTC TGGTAAGACG ACCACGCTCA ACGCGCTGTC GAGCTTTATC
GACAACTCCG AGCGCATCCT GACCATTGAG GATACGGCGG AACTGCAGTT GCAACAGACC
CATGTGGGAC GCATGGAAAG CCGCCCGCCC AACGTCGAGG GCAAGGGAGA GGTCAGCCCG
CGCGACTGTC TGAAAAACGC GCTGCGGATG CGCCCGGATC GCATCATCGT CGGCGAAACG
CGTGGCGCCG AAGTGATCGA CATGCTGCAG GCGATGAACA CGGGCCACGA CGGCTCGATG
ACCACGATCC ACGCAAACTC TGCCCGTGAC GGGATCTCGC GTCTCGAGAA CATGATCGCC
ATGGCCGGGA TCGAGATGCC GATCAAGGCT GTGCGCAGCC AGATTGCCTC GGCTGTGAAC
CTGATCGTAC AGGCCTCGCG CCTTCAGGAT GGTTCGCGCC GGATGACCTC CATCACCGAG
ATCACCGGGA TGGAAGGCGA TGTTATCTCC ATGCAGGAAA TCTTTCGCTT CCAGCGCGTG
GGCCTTACCC CCGACAACAA GATCATCGGC CATTTTACCG CGACCGGCGT GCGCAGCCAT
TTCTCGGAAC GCTTCCGCCT CTGGGGCTAT GACCTGCCGG CGTCGATCTA CGAGCCAACC
GTGATGGAGA GCCGCTGA
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| Protein sequence | MFSKYKKQSS APAAPAAAPA AAPKPAASPS APAAGVKAVL RRPDQRNAAA AAPQDRERKR
KERLSEIKID LHRELLENLN LAALEKASES ELRSEIAAIS NEVLQEKSIV LNREDRQQLM
KELYDEVTGL GPLEALLKDD TVSDILVNGP QQIFIERAGK LELSDITFKD EKHLMRIIDK
IVSAVGRRVD ESNPYVDARL QDGSRFNAMV PPIAVDGSLV SIRKFKKDKL QIDDLVNFGA
FTEEMAAYLQ AAVSTRLNVI VSGGTGSGKT TTLNALSSFI DNSERILTIE DTAELQLQQT
HVGRMESRPP NVEGKGEVSP RDCLKNALRM RPDRIIVGET RGAEVIDMLQ AMNTGHDGSM
TTIHANSARD GISRLENMIA MAGIEMPIKA VRSQIASAVN LIVQASRLQD GSRRMTSITE
ITGMEGDVIS MQEIFRFQRV GLTPDNKIIG HFTATGVRSH FSERFRLWGY DLPASIYEPT
VMESR
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