| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2313 |
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| Symbol | |
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| ID | 4078303 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 2434344 |
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| End bp | 2436134 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 66% |
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| IMG OID | 638007635 |
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| Product | peptidoglycan binding domain-containing protein |
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| Protein accession | YP_614307 |
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| Protein GI | 99082153 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGAACC TATTTGCCTC GGTGTTGTGG GCAGTGATCC TGTGCTTGAG TGCGCTATCG
GGCGCCTCGC AGGCGCAGCA ATCCAGTGCC GGAGGCGTCT GGATTCAGGT GGCCGCGCGC
CCGTCGCTGC AACAGGCACA GGAAGAGGCG CGCAATTTCG CGGCCCGCCT GCCCGATGTG
TCGGGCTATG CCTTGGGCGG CGGCTGGTAT GGCATCGTGA TTGGCCCCTA TGCTCGCCCC
GATGCCGAGC AGGTGTTGCG GGTCTATCGC GCTGAGGGCC AGATCCCGCG CGACAGCTTC
ATCACCTTCT CAAGCAATCT GCGCAGCCGG TTTTACCCCG TTGGAGCGGA CGCCGACACA
GGCACCACCG CCCCTGCGCC GCTGACCACC TCCGATGCCG AGACCGCGCC GCCAGAGCCA
GCGGAGGACG CCACGTCTGA GGTGACGCCC GAGGTGGTCG TGGTGGATGA GACCCCCGCC
GAAGCGCGCC AGAGCGAACG CGCCCTCACA CGCGAAGAAC GCATGGATCT GCAAATCGCG
CTGAAGGCGG CAGGGTTCTA CACCTCCGGC ATCGACGGTG CCTTTGGCCG CGGCACGCGC
GCCTCCATGT CTGACTGGCA GGTGGCACGC GGGTATGAGC CGACCGGCGT TCTGACCACT
GCCCAGCGCC AGGCCCTGAT GGACGAGTAT AACGCGCCGC TGATTTCCAC CGGCATGGCG
TCTTATACTG ACGAGCGCGC GGGCATCCGC ATGGATCTGC CCTTGGGCGA AGTGGCCTTC
AGCCGTTATG AGCCGCCTTT TGCGCATTTT GACACGGCCG GAGATCTCGG CGCTCGGGTT
CTGCTGATTT CGCAGCCCGG CGACCGCCGC ACGCTCTATG GTCTCTATGA CATCATGCAG
ACGCTGGAGA TTGTGCCGCT CGAGGGACCA CGCGAACGCA GCGGCGACCG CTTCACGCTC
GAAGGCCGCA ACAGCGACAT CGTCTCTTAT ACCGAGGCCC GCCTCGACAA TGGCGAGATC
AAAGGCTTCA CGCTGGTCTG GCCCGCAGGG GACGAGGCGC GCCGCGCCCG CGTTCTTTCG
GCCATGCAAG AGAGCTTTAC CCGTCTGGAG AACGTGCTCG ATCCGGCGGC CGGCATGGAT
GATGCGCAGT CCATCGACCT TGTGTCGGGG CTGGAGATCC GCAAACCGCG CCTGTCGCGC
TCGGGTTTCT TTGTGTCGGG CGACGGTGTG GTTGTGACCA CCGCCGATGT GGTGAACGGC
TGCGGCAGCG TCACAGTAGA CCGCGATGTG AAGGCCGAGG TGCTGTTGCG CGATAGCGAG
GCAGGCATTG CAGTGCTGAA ACCTTCCGAG GCACTGGCCC CGATGGCGAC TGCGCCGCTT
GCGGCCAACA CGCCGCGCCT GCGCAGCGCG CTTGCCGTGT CGGGCTACTC CTACGGCGGA
ATCCTTGGCG CACCAAGCCT CACATGGGGC GCGCTCAGCG ATCTCAAGGG GCTGCAAGGC
GAAAGCCATC TGGCGCGTCT GGACCTGACC GCCCAGCCCG GTGATGCGGG CGGGCCGCTT
CTTGGCAAGG ATGGCACCGT GCATGGCATG CTGCTGCCGG AGGCCACCAA TGGCCCCACC
CTGCCCGAGG GCGTGCGCTT TGCCCTAAAG GGCGAGGTCA TCCGCATGGC GCTCGAACAG
GCTGGCGTGG GCTTGCCCGC GACCGAGGCC GCCGCCACCG GCGAGCTGCC CATCTCGATC
CTGCAAAAAG AGGCCACTGG CCTCACCACG CTGGTCAGCT GCTGGGAGTA A
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| Protein sequence | MKNLFASVLW AVILCLSALS GASQAQQSSA GGVWIQVAAR PSLQQAQEEA RNFAARLPDV
SGYALGGGWY GIVIGPYARP DAEQVLRVYR AEGQIPRDSF ITFSSNLRSR FYPVGADADT
GTTAPAPLTT SDAETAPPEP AEDATSEVTP EVVVVDETPA EARQSERALT REERMDLQIA
LKAAGFYTSG IDGAFGRGTR ASMSDWQVAR GYEPTGVLTT AQRQALMDEY NAPLISTGMA
SYTDERAGIR MDLPLGEVAF SRYEPPFAHF DTAGDLGARV LLISQPGDRR TLYGLYDIMQ
TLEIVPLEGP RERSGDRFTL EGRNSDIVSY TEARLDNGEI KGFTLVWPAG DEARRARVLS
AMQESFTRLE NVLDPAAGMD DAQSIDLVSG LEIRKPRLSR SGFFVSGDGV VVTTADVVNG
CGSVTVDRDV KAEVLLRDSE AGIAVLKPSE ALAPMATAPL AANTPRLRSA LAVSGYSYGG
ILGAPSLTWG ALSDLKGLQG ESHLARLDLT AQPGDAGGPL LGKDGTVHGM LLPEATNGPT
LPEGVRFALK GEVIRMALEQ AGVGLPATEA AATGELPISI LQKEATGLTT LVSCWE
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