| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2166 |
|---|
| Symbol | |
|---|
| ID | 4076765 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 2275574 |
|---|
| End bp | 2277385 |
|---|
| Gene Length | 1812 bp |
|---|
| Protein Length | 603 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 638007486 |
|---|
| Product | single-stranded-DNA-specific exonuclease RecJ |
|---|
| Protein accession | YP_614160 |
|---|
| Protein GI | 99082006 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0608] Single-stranded DNA-specific exonuclease |
|---|
| TIGRFAM ID | [TIGR00644] single-stranded-DNA-specific exonuclease RecJ |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 25 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.145891 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | TTGGGAAAAG ATGAAGGCCG GGTCCCGCGC GGGTCCGGCC TTTTTTACAC AGAAGACGAG
GGAATAGAGT TGAGCTTTCT GGGTGTCGAG ACCTCACTGA CCGGACGCCG CTGGGTGGGA
CCCGGTGTGG ATCAGGCCCG CGCAAGCGAG CATCTGGCGC AGGAAACCGG GCTACCTCCT
GCGGTGTGTC AGGTCCTCGC ACGCCGGGGC GTGCCCGCGC ATGAGGCCAC CGGGTTTCTG
ACGCCGCAGC TCAAGGATCT CTTGCCCGAT CCGCGCCGCA TGAAGGACAT GGAGACCGCA
GCAGCGCGCT TTCTGCAAGC CGTGGAGCGG CGCGAGCGGA TTGCGATCTT TGCCGATTAT
GACGTCGATG GCGGCTCTTC GGCGGCGCTT TTGCTGGTGT ACCTGCGACA GATGGGCCAG
CAGGCGACAC TATATATTCC GGATCGCATT GATGAGGGTT ATGGCCCCAA TGATGCGGCA
ATGGCGGCGC TGGCGCGCGA TCATGACCTT ATCATCTGCG TGGACTGTGG CACACTTTCG
CACGGGCCCA TCGCAGCGGC GAAGGGCGCG GATGTGGTGG TTCTGGATCA CCACCTTGGC
GGCGAGACCC TGCCCGACTG CGTGGCAGTG GTGAACCCCA ACCGGCAGGA TGAGGACGGC
GATCTGGGCT ATTTCTGCGC CGCTGGTGTG GTGTTCCTGA TGCTCGTCGA GGTGCGCCGT
CAGGCGCGCG ACAAGGGGCT TGGCGCAGGC CCTGATCTGA TGGCGATGCT CGATCTGGTG
GCGCTGGCCA CCGTGGCAGA TGTGGCCCCC CTGATCGGCG CGAACCGCGC GCTGGTGCGC
CAAGGCCTGA AGGTGATGGG GCGACGCCAA CGTCCGGGTC TGGTTGCCCT CGCGGATGTG
AGCCGGATGG ATGCGGCGCC CTCAACCTAT CACCTCGGCT TTCTCCTGGG GCCGCGGGTC
AATGCGGGCG GGCGGATCGG CAAGGCGGAC CTTGGTGCGC GCCTGCTGTC GACGGATGAC
CCGCATGAGG CTGCTGCGCT CTCCGAACGG CTTGACCAGC TCAATACGGA GCGGCGCGAC
ATTGAGAACG CGGTGCGTGC TGCCGCACTG GAACAGGCCG AGGCGCGCGG CTTTGACGCG
CCTTTGGTCT GGGCGGCGGG GGAAGGCTGG CATCCGGGCG TGGTCGGCAT CGTCGCCTCG
CGCCTCAAGG AAGCAACGGG CCGACCTGCG GTGGTCATCG GCCTAGACGG CGAAGAGGGC
AAAGGATCGG GACGCTCTGT CTCGGGCATC GACCTTGGGG CCTCGATCCA GAAGGTCGCA
ATGGAAGGGC TGCTCTTGAA GGGCGGCGGG CACAAGATGG CTGCGGGCCT CACGGTGGCG
CGCGGCCAGC TGGAACCCGC GATGGCCCGC CTTGCAGAGC TCTTGGACAA ACAGGGCGCA
GGCGATCTGG GCCCCGCGGA TCTGAAGCTC GACGGGATGC TGATGCCCGG CGCCGCCAGC
GTGGAGTTGA TCGAGCAGAT CGAACAGGCC GGGCCGTTTG GCGCTGGGGC CCCTGCCCCC
CGCTATGGGT TTCCTGACGT CGCCGTACGC TTTGCCAAAC GGGTTGGAGA ATCGCATCTC
AAGGTCAGTT TCACCGATGG GATGGGCGGC AATATCGACG CCATCGCCTT TGGCGCCTTT
GACACCAACC TCGGGCCGCG CTTGCTCGAA CACGGAGGCG CGCGCTTTCA TGTCTCCGGA
CGGCTAGAGG TCAACACCTG GGGCGGGCGC CAAAGCGCGC AATTGCGACT GGAGGACGCA
GCCGAGGCCT GA
|
|---|
| Protein sequence | MGKDEGRVPR GSGLFYTEDE GIELSFLGVE TSLTGRRWVG PGVDQARASE HLAQETGLPP
AVCQVLARRG VPAHEATGFL TPQLKDLLPD PRRMKDMETA AARFLQAVER RERIAIFADY
DVDGGSSAAL LLVYLRQMGQ QATLYIPDRI DEGYGPNDAA MAALARDHDL IICVDCGTLS
HGPIAAAKGA DVVVLDHHLG GETLPDCVAV VNPNRQDEDG DLGYFCAAGV VFLMLVEVRR
QARDKGLGAG PDLMAMLDLV ALATVADVAP LIGANRALVR QGLKVMGRRQ RPGLVALADV
SRMDAAPSTY HLGFLLGPRV NAGGRIGKAD LGARLLSTDD PHEAAALSER LDQLNTERRD
IENAVRAAAL EQAEARGFDA PLVWAAGEGW HPGVVGIVAS RLKEATGRPA VVIGLDGEEG
KGSGRSVSGI DLGASIQKVA MEGLLLKGGG HKMAAGLTVA RGQLEPAMAR LAELLDKQGA
GDLGPADLKL DGMLMPGAAS VELIEQIEQA GPFGAGAPAP RYGFPDVAVR FAKRVGESHL
KVSFTDGMGG NIDAIAFGAF DTNLGPRLLE HGGARFHVSG RLEVNTWGGR QSAQLRLEDA
AEA
|
|---|
| |