| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2125 |
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| Symbol | |
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| ID | 4076439 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 2230638 |
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| End bp | 2232287 |
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| Gene Length | 1650 bp |
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| Protein Length | 549 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007445 |
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| Product | choline/carnitine/betaine transport |
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| Protein accession | YP_614119 |
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| Protein GI | 99081965 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG1292] Choline-glycine betaine transporter |
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| TIGRFAM ID | [TIGR00842] choline/carnitine/betaine transport |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGACC AAACGACGGA AACGCCCGAC GGCATCCCAA GCCCGGACGG CGCAGCACAT
ATCATTGATA CGGATTATGA AATCGGGCAG GACAACGTCG AGGGGTCCGT TGGCCCCTTT
GGCTTTGACA TCCACAACCC GGTGTTTGCC ATCTCCGGGA TCGCGGTTGT GGCCTTCGTG
TTCTACACGC TCGCACTGCC CGAGCAGGCC GGCAACGTGT TCTCCTGGCT CTTTAGCGCA
GTGACCAAGG GCTTTGACTG GTTCTTCCTC GGTGCCGCAA ATATCTTTGT GATCTTCTGC
CTGTTCCTGA TCGTGACGCC CTTTGGCAAT GTGAGGCTCG GCGGCACGGA GGCAGAACCC
GACTATAGCT ACATTGGCTG GTTTGCGATG CTGTTTGCAG CCGGTATGGG CATCGGTTTG
ATGTTCTATG GGGTTTCCGA ACCTCTGAGC CATTTTGCCT CTTCCATCGG GGGCACCGCA
TCCGAGGGCG GCGTGCGTAC CGACTGGGCA CCACTTGGGG CCGCAGGTGG TAATGAAGCC
GAGGCCGTGC GCCTCGGGAT GGCGGCGACG ATCTTTCACT GGGGGCTTCA CCCTTGGGCG
ATCTATGCCG TTGTGGCGCT TGCGCTGGCC TTGTTCAGCT ACAACAAGGG CCTGCCGCTC
ACGATCCGGT CTGCTTTCTA TCCGATTTTT GGCGATGCCG TCTGGGGTTG GGTTGGCCAT
GTGATCGACA TCCTTGCTGT CTTTGCGACC CTCTTTGGCC TGGCAACTTC GCTCGGATTT
GGCGCAACGC AAGCCAATGC GGGCCTCAAT GAGCTGTTTG GCATCTCGAT CGGGTCCACC
ACTGAGGTCA TCCTGATCTC GGCCATCACC GCAATCGCAC TGGTTTCTGT GCTGCGCGGC
CTTGATGGCG GTGTGAAGAT CCTGTCGGAG ATCAATATGG GTCTGGCCTT TGTGCTGCTG
GTCTTTGTGC TGCTGGTGGG GCCGACAGTG TTCCTGCTGT CGCTGTTCTG GGACTCGCTG
ATGGCCTATT TCCAGTATCT CCCGGCGCTC TCGAACCCGG TCGGACGTGA GGATGTCAAC
TTCATGCAGG GCTGGACGTC GTTCTACTGG GCGTGGTGGA TTTCCTGGTC GCCGTTCGTG
GGCATGTTCA TCGCCCGCGT CAGCCGTGGC CGGACCGTGC GTGAATTCAT CATCTGCGTG
CTGTTGATCC CGTCGATGGT CTGCGTCCTT TGGATGAGCG TATTCGGCGG CACTGCGATC
CATCAGGTTC TCTCTGATGG CTACACCGTA GCGCAGGATG CGGCGCTGGA GCTGAAGCTC
TTCAAGATGC TGGATGTGAT GCCGCTTGCC GGGATCACCT CGCTGGTCGG CATCGTGCTG
GTGATCGTGT TCTTCGTGAC CTCCTCGGAC TCGGGGTCGC TGGTGATCGA CACCATCACC
GCTGGCGGCA AGGTAGATGC GCCGGTACCG CAGCGGGCCT TCTGGTGCGT CTTTGAAGGT
GCGGTTGCGA TCGTTCTCCT CCTGAGCGCC GGCGGCCTGC AATCGTTGCA GTCCATGGTG
ATCTCTACGG GCCTGCCGTT CACGGTTGTG CTGTTGGTGA TGTGCTATGC AATCCTGCGC
GGCCTGATGA GCGAGCGAAA GGCGACCTAA
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| Protein sequence | MTDQTTETPD GIPSPDGAAH IIDTDYEIGQ DNVEGSVGPF GFDIHNPVFA ISGIAVVAFV
FYTLALPEQA GNVFSWLFSA VTKGFDWFFL GAANIFVIFC LFLIVTPFGN VRLGGTEAEP
DYSYIGWFAM LFAAGMGIGL MFYGVSEPLS HFASSIGGTA SEGGVRTDWA PLGAAGGNEA
EAVRLGMAAT IFHWGLHPWA IYAVVALALA LFSYNKGLPL TIRSAFYPIF GDAVWGWVGH
VIDILAVFAT LFGLATSLGF GATQANAGLN ELFGISIGST TEVILISAIT AIALVSVLRG
LDGGVKILSE INMGLAFVLL VFVLLVGPTV FLLSLFWDSL MAYFQYLPAL SNPVGREDVN
FMQGWTSFYW AWWISWSPFV GMFIARVSRG RTVREFIICV LLIPSMVCVL WMSVFGGTAI
HQVLSDGYTV AQDAALELKL FKMLDVMPLA GITSLVGIVL VIVFFVTSSD SGSLVIDTIT
AGGKVDAPVP QRAFWCVFEG AVAIVLLLSA GGLQSLQSMV ISTGLPFTVV LLVMCYAILR
GLMSERKAT
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