| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_2066 |
|---|
| Symbol | |
|---|
| ID | 4077993 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2169776 |
|---|
| End bp | 2170804 |
|---|
| Gene Length | 1029 bp |
|---|
| Protein Length | 342 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 63% |
|---|
| IMG OID | 638007385 |
|---|
| Product | histone deacetylase superfamily protein |
|---|
| Protein accession | YP_614060 |
|---|
| Protein GI | 99081906 |
|---|
| COG category | [B] Chromatin structure and dynamics
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG0123] Deacetylases, including yeast histone deacetylase and acetoin utilization protein |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 17 |
|---|
| Plasmid unclonability p-value | 0.229511 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCGA TCTATGATCC CCGCCAACGC GCCCATAACC CCAGCCAGTT CATGGCCTTT
GGGGTGATGA AGCCCAATCC CGAACAACCC GAACGCACCG AGATCCTGCG CAGCGGCGCG
GAGGCGGCAG GCTGTACCTT CACAGCGCCC GAGGATGCGG GCCTTGGCCC CATCGCGGCG
CTGCATTCGC CGGAATACCT GACCTTCCTG CAGACCATCC ACGCCCGCTG GAGCGAGATC
GAAGGCGCAG GCCCCGAGGT GATTTCTCAT ATCAAGCCGG GAGATCGCCG TGACAGTTAT
CCGCGGTCTG CGCTAGGGCA GGCGGGCTAT CATCAGGCCG ATACCTCCTG TCCGATCAAT
GCCGACACTT GGGGCTCTGC CTATTGGTCG GCGCAGACTG CGATCACCGC CGCCGACCTG
ATTGCAAAGG GCGAGCGCGC CGCCTATGCG CTCTGCCGCC CGCCGGGGCA TCACGCGTTT
GGAGATATGG CGGGGGGGTT TTGTTTCCTC AATAACTCCG GCATCGCGGC GCAGCTGTTG
CGGGATCGGG GCCTCAGGCC CGCAATTCTG GACGTGGATG TCCACCACGG CAACGGCACG
CAGGGGCTGT TTTATGATCG CGACGACGTG CTGACGCTCT CGATCCACGC CGACCCTGCG
GACTTCTACC CGTTCTTCTG GGGCCACAGT TCTGAGCGCG GCGAGGGCCG GGGGCGGGGC
TATAACCTCA ACCTGCCGCT GCCGCGTGGT ACCGAAGATG CACCGTTCCT GGATGCACTG
GACACCTGTC TTGACCGGGT GCGCGCCTTT GGGTGCGATG TGCTTGTGAT CGCGCTGGGC
CTTGATGCCT CCGTGGACGA TCCGTTTCAG GGCTTTCAGG TTACCGGCGA CGGGTTTTCG
CGCATTGGCG AGGCAATTGC CCGCGCCGGC CTTCCAACGC TTTTTGTGCA GGAAGGCGGT
TACATCTCCG ACAGCCTCGG TCATAACCTC ACCCGCGTGC TTGGCGGATT TACCTCTGCT
GCACGCTGA
|
|---|
| Protein sequence | MKAIYDPRQR AHNPSQFMAF GVMKPNPEQP ERTEILRSGA EAAGCTFTAP EDAGLGPIAA
LHSPEYLTFL QTIHARWSEI EGAGPEVISH IKPGDRRDSY PRSALGQAGY HQADTSCPIN
ADTWGSAYWS AQTAITAADL IAKGERAAYA LCRPPGHHAF GDMAGGFCFL NNSGIAAQLL
RDRGLRPAIL DVDVHHGNGT QGLFYDRDDV LTLSIHADPA DFYPFFWGHS SERGEGRGRG
YNLNLPLPRG TEDAPFLDAL DTCLDRVRAF GCDVLVIALG LDASVDDPFQ GFQVTGDGFS
RIGEAIARAG LPTLFVQEGG YISDSLGHNL TRVLGGFTSA AR
|
|---|
| |