Gene TM1040_1951 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1951 
Symbol 
ID4076901 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp2053848 
End bp2054516 
Gene Length669 bp 
Protein Length222 aa 
Translation table11 
GC content64% 
IMG OID638007266 
ProductCrp/FNR family transcriptional regulator 
Protein accessionYP_613945 
Protein GI99081791 
COG category[T] Signal transduction mechanisms 
COG ID[COG0664] cAMP-binding proteins - catabolite gene activator and regulatory subunit of cAMP-dependent protein kinases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones22 
Plasmid unclonability p-value0.861655 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0267012 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGGCTGCCG CTCCTCTCCC TGCCTCCAGC TTTCTGTCCG GGGCCTCGGA GCGCCTGCGG 
GCCATGCTCG ACAGCCAAGC CACAGATGTT CATCTCGAAA CGGGCGATGT GCTCTTTGAG
CGCGGCGACG AGGGCGACGC GCTTTATGCG ATCATCTCTG GCGCTCTTGA GATCTCCACC
CTTTCCGCAG CGGGGCGCAA GCTCTCGCTT GATATGATGC GCCCGGGGGC GATCTTTGGT
GAGATCGCAA TGTTCGATCC CGGCGAGCGC ACCGCCACCG CCACCGCCGC TGAACCAAGC
CACCTGCGCC GCCTGCGTCA CAGGGACGTG CTGGCGCAGT TGACCAAGCA TCCCGAACTT
GCGGGTGATA TGCTGAAGCT CGCGGGGCAG CGCATGCGCT GGATGAATAC ACAACTCAAT
GAGCAAGTGT TCCTCCCCAT GCCGGTGCGT CTGGCGCGCA AGCTCCTCTA TCTCACGCCC
GCGGATGGCA ACGGCCAGCT GAGCCTCTCG CAATCGGAAC TGGCCGAATT CGTCGGCGCC
ACCCGCGAAG CGGTCTCAAA GACCCTGTCG AACTGGCGCA AGGCGGGCCT CATCGAGATC
AGCCGCGGAG GACTGCACCT CAAAGATCGC GGCGGGCTGG CGGTTCTGGC CGACCCCGAA
GGCATCTAA
 
Protein sequence
MAAAPLPASS FLSGASERLR AMLDSQATDV HLETGDVLFE RGDEGDALYA IISGALEIST 
LSAAGRKLSL DMMRPGAIFG EIAMFDPGER TATATAAEPS HLRRLRHRDV LAQLTKHPEL
AGDMLKLAGQ RMRWMNTQLN EQVFLPMPVR LARKLLYLTP ADGNGQLSLS QSELAEFVGA
TREAVSKTLS NWRKAGLIEI SRGGLHLKDR GGLAVLADPE GI