| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1932 |
|---|
| Symbol | |
|---|
| ID | 4076883 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 2031373 |
|---|
| End bp | 2033085 |
|---|
| Gene Length | 1713 bp |
|---|
| Protein Length | 570 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638007248 |
|---|
| Product | acetolactate synthase, large subunit |
|---|
| Protein accession | YP_613927 |
|---|
| Protein GI | 99081773 |
|---|
| COG category | [E] Amino acid transport and metabolism
[H] Coenzyme transport and metabolism |
|---|
| COG ID | [COG0028] Thiamine pyrophosphate-requiring enzymes [acetolactate synthase, pyruvate dehydrogenase (cytochrome), glyoxylate carboligase, phosphonopyruvate decarboxylase] |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.461619 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCAGCG ACACAGCACA GCCCGCATCC GCCTCGCGTC GTAGCGGTGG CAGAGTTCTT
GCAGATCAGT TGCAGATTCT AGGGGCAGAC ACGATTTATT GCGTCCCCGG TGAGAGTTAT
CTGGAGTTGC TGGACGGGCT TCACGCCCAC CAGGAGAGCA TCAACGTGGT GACCTGTCGC
CACGAATCCG GTGCCTCAAA CATGGCCGAT GCCTATGGTA AGCTGACCGG AAAGCCCGGC
ATCTGTGCTG TGACACGCGG GCCGGGAGCG ACCAATGCCT CTAATGGGGT CCACACCGCG
TTTCAGGACT CGACGCCTAT GATCCTTCTG ATCGGGCAGG TGGGGCGCGA GATGGTGGAT
CGCGAAGCGT TCCAAGAGAT TGATTACCGG CGCATGTTTG GCCAGATGGC CAAATGGGTA
GCGCAGATCG ATGATGCAGC CCGCATCCCA GAATATATGG CGCGCGCTTG GAAAACCGCG
CTTTCTGGTC GTCCCGGGCC GGTGGTTTTG GCGCTGCCAG AGGACATGCT GACCGATGAG
GTCACGGTCG CAGATCTGCG CGTGACGCCG CCCGCGCGTC CGGCCCCTGC CGCGCATGAC
ATCGAGGCAC TCTCGGCTAT GATCGCCCGT GCCAAAAAGC CGATGCTGAT GGTAGGCGGG
CCAAGCTGGA GCGAGGCCTG TGCAGACAAA GCGCTGGCCT TTGCCGAGCG TTTGGGCCTG
CCGGTCACGA CATCCTTTCG CAGTCAGGAC TATGTAAACA ACGGTCACGA CAATTATGTC
GGCCCGGTTG GCATCGCCCC AATTCCCAAT CTTCGTAAAC GGTTGCGTGA AGAGGTTGAT
CTTCTGATAA CGGTTGGCCC GCGCCTTGGC GAGATGACGA CCCAAGGCTA CGAGCTCATC
GATATTCCGC ATCCGCAGAT GACCTTTGTG CATGTGCATC CGGGTGCTGA GGAGTTGGGA
CAAGTCTATC AGCCCGATCT TGCGATCCAG TCCGACCCTG AGCTGTTCTT TGACGCCGCC
GAGGCGATTA CTCTGCCGAG CCAGCCCGAA GGCTGGGCCG ACTGGGTGCA GCAGCAGCGA
GCGGATTACC TCGCCTTTCA GACCCCAACC GAGGTGCCAG GGGATGTGAA CATGGGCCAT
GTGGTGCGCC ACATGAGCGA AACGCTGCCC GAGGACACGA TCTACACCAA CGGGGCGGGG
AACTATACAG TCTGGCTGCA CCGGTTCCAT CAGCACCGCG CCTATCGCAC GCAACTGGCG
CCCACCAGCG GCTCCATGGG GTATGGTGTA CCGGCGGCGG TTGCGGCCAA GCTCGCGCAT
CCCGACCGCA CTGTGGTTGC GATGGCAGGC GATGGGTGTT TCATGATGAC CTCGCAAGAG
CTGGCCACCG CGGCGCAGCA TGGTGCTGAT GTCATCTATG TTGTCGTAAA CAATGGCATG
TACGGCACCA TCCGCATGCA TCAGGAACGC CATCACCCCG GCAAGGTCAT GGCCACAAAG
TTGGTGAACC CCGATTTTGT CGCCTATGCC GCGTCCTTTG GGATCGCGGG GGAACGGGTG
CTCCGCACCG AGGATTTCCC GGCGGCGTTG GAGCGCGCCC GCACAACCAA GGGCGGCTAC
ATGATCGAGA TTGTGGTTGA CCCCGAAGCC TTGACCCCAA ACCAGTCGCT TTCGGCTGTA
CGCGCCGAAG GACAGGGCAA GGCAAACGCC TGA
|
|---|
| Protein sequence | MSSDTAQPAS ASRRSGGRVL ADQLQILGAD TIYCVPGESY LELLDGLHAH QESINVVTCR
HESGASNMAD AYGKLTGKPG ICAVTRGPGA TNASNGVHTA FQDSTPMILL IGQVGREMVD
REAFQEIDYR RMFGQMAKWV AQIDDAARIP EYMARAWKTA LSGRPGPVVL ALPEDMLTDE
VTVADLRVTP PARPAPAAHD IEALSAMIAR AKKPMLMVGG PSWSEACADK ALAFAERLGL
PVTTSFRSQD YVNNGHDNYV GPVGIAPIPN LRKRLREEVD LLITVGPRLG EMTTQGYELI
DIPHPQMTFV HVHPGAEELG QVYQPDLAIQ SDPELFFDAA EAITLPSQPE GWADWVQQQR
ADYLAFQTPT EVPGDVNMGH VVRHMSETLP EDTIYTNGAG NYTVWLHRFH QHRAYRTQLA
PTSGSMGYGV PAAVAAKLAH PDRTVVAMAG DGCFMMTSQE LATAAQHGAD VIYVVVNNGM
YGTIRMHQER HHPGKVMATK LVNPDFVAYA ASFGIAGERV LRTEDFPAAL ERARTTKGGY
MIEIVVDPEA LTPNQSLSAV RAEGQGKANA
|
|---|
| |