Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1841 |
Symbol | |
ID | 4077866 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1942779 |
End bp | 1943336 |
Gene Length | 558 bp |
Protein Length | 185 aa |
Translation table | 11 |
GC content | 58% |
IMG OID | 638007157 |
Product | polyhydroxyalkonate synthesis repressor, PhaR |
Protein accession | YP_613836 |
Protein GI | 99081682 |
COG category | [S] Function unknown |
COG ID | [COG5394] Uncharacterized protein conserved in bacteria |
TIGRFAM ID | [TIGR01848] polyhydroxyalkanoate synthesis repressor PhaR |
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Plasmid Coverage information |
Num covering plasmid clones | 17 |
Plasmid unclonability p-value | 0.126863 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.68112 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCGGAAC AGGATAAGCC TCTGCTGATC AAACGCTATG CCAGTCGCAG GCTCTACAAT ACGGAGACCA GCGATTACGT GACACTGGAA GACATCGCCG GTTTTATCCG CGATGGGCGG GAAGTGCAGA TCATTGATCT CAAGACCGGG GATGACCTGA CCCGACAGTA TCTGCTTCAG ATCATTGCCG AGCATGAGAG CCGGGGCGAA AATGTGCTGC CGGTCAATGT GCTGAATGAT CTGGTGCGCA GCTACATGGT GCCCGGAGGC GGGGTGATGC CGCAGTTTCT GCAGGCTTCT TTTGACATGT TTCGCGACAG CCAGTCGAAG ATGATGGAGA ACATGAATGC GATGAACCCG ATGGCGCAGA TGCCCGGGTT CGAGGCAATG AAAGCCCAGC AGGAAGCGTT TCTGAAGGCC ATGACCGGCG GCTTTGGCGG CGGCTGGACC GGCGGCGGTG GCGAGGACGG CAGCCCTGCG GCAGAGGGCG AAGAAGATCT GGGCGACATC AAACGCCAAC TAGCCGAGTT GCAAGAGAAG CTCTCCAAGC TGAGCTGA
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Protein sequence | MAEQDKPLLI KRYASRRLYN TETSDYVTLE DIAGFIRDGR EVQIIDLKTG DDLTRQYLLQ IIAEHESRGE NVLPVNVLND LVRSYMVPGG GVMPQFLQAS FDMFRDSQSK MMENMNAMNP MAQMPGFEAM KAQQEAFLKA MTGGFGGGWT GGGGEDGSPA AEGEEDLGDI KRQLAELQEK LSKLS
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