| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1740 |
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| Symbol | |
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| ID | 4075804 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1834669 |
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| End bp | 1836678 |
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| Gene Length | 2010 bp |
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| Protein Length | 669 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638007054 |
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| Product | DNA topoisomerase IV subunit B |
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| Protein accession | YP_613735 |
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| Protein GI | 99081581 |
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| COG category | [L] Replication, recombination and repair |
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| COG ID | [COG0187] Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit |
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| TIGRFAM ID | [TIGR01055] DNA topoisomerase IV, B subunit, proteobacterial |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.00895559 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGCGCCATA ATGAGATCAA ACCACATCAA AGAATGAGCA GCGATCCGCA CATGGCAGAT
GACCTTCTGA GCCCCTCTTC GTCTGACACC TATGACGCCT CCTCGATCGA GGTTCTCGAG
GGCCTCGAAC CGGTGCGTCA GCGCCCCGGC ATGTATATCG GTGGCACGGA TGAGCGCGCG
TTGCATCACA TGGTGGCCGA GATCCTCGAC AACTCCATGG ACGAGGCGGT CGCGGGTCAT
GCCAACCGCA TCGAGGTGGA GCTGCACGCG GATTATTCGC TGACCGTGCG CGACAACGGG
CGCGGCATTC CAATTGATCC GCACCCGAAG TTTCCCGACA AATCCGCGCT GGAGGTGATC
CTCTGTACGC TGCACGCAGG CGGCAAGTTC TCGGGCAAGG CCTACCAGAC ATCGGGCGGC
CTGCACGGGG TTGGCTCTTC GGTTGTAAAC GCGCTCTCGG ATTCGCTGGT GGTTCAGGTG
GCCAAGAACA AGGAATTGTT CGAACAGCGG TTTTCGCGCG GCAAGCCCTT GGGCGGTGTG
GAAAAAATCG GCGCTGCCCC CAATCGGCGC GGCACCACGG TGACATTTCA CGCTGATGAG
CAGATCTTTG GCTCGCACCG GTTCAAACCG GCGCGCCTGT TCAAGCTCGT GCGCTCCAAG
GCCTATCTTT TTTCGGGCGT CGAGATCCGT TGGAAATCCG CCATTGATGA CGGAGAGACC
CCACAGGAAG CGACATTCCA TTTCCCTGGT GGTCTGCGCG ATTACCTCAC CGAAGTGCTG
GGCAAATCCT CGGTTTATGC CGATGCCCCC TTTGCAGGCA AAGTCGAGTT TCGCGAGAAG
TTCGGCGAGC CGGGTTATGT GGAATGGGCG ATCAACTGGA CGCCCTCGCG CGACGGGTTC
ACCCAGTCTT ATTGTAACAC CGTCCCCACC CCGGAAGGCG GCACCCATGT CGCGGGGTTC
TGGTCCGCGA TCCTCAAGGG GATCAAGGCC TATGGCGAGC TGGTCGGCAA CAAGAAGGCA
GGCCAGATCA CCCGCGACGA CCTGATGGCG GGTGGCTGTG CGCTGGTCTC TTGTTTTATC
GCTGACCCGG CGTTTGTGGG CCAGACCAAG GACCGCCTGT CGACCGAAGC CGCGGCCAAG
ATGGTTGAAA ACTCGGTGCG CGACCATTTC GACAACTGGC TTGCGGCCGA TACAAAATCC
GCGGGCGCCA TCCTTGATTT CCTGATCCTG CGCGCCGAGG AACGTCTGCG CCGCAGACAG
GAAAAGGAAA CCGCCCGTAA ATCCGCCACC AAGAAACTGC GCCTGCCGGG CAAGCTCACG
GATTGTACAT CCAAGGATCG CTCGGGCACC GAACTGTTCA TCGTCGAGGG GGACTCGGCC
GGTGGCTCCG GCAAAGGCGC GCGCAACCGC GAGTATCAGG CGCTCCTGCC GCTCAAGGGC
AAGATCCTGA ACGTGCTCGG TGCGGCCTCG GGCAAGCTTA CCTCGAACGC CGAGATCCGA
GATCTCTGCG AAGCGCTGGG GGTGGGGCTA GGAACCAAGT TCAACCTTGA TGACCTGCGC
TATGACAAGA TCATCATCAT GACCGATGCG GATGTGGACG GTGCACATAT CGCGTCGCTT
CTGATGACCT TTTTCTTTAC CCAGATGCGG CCGCTGATTG ACGGTGGCCA TCTCTATCTC
GCCTGCCCGC CCCTGTTCCG CCTCACCCAG GGGGCCAAGC GCGTCTACTG CCTCGACGAG
GCCGAGCGCG ACATGTGGAT GGAAAAAGGT CTGGGCGGCA AAGGCAAGAT CGACGTGTCG
CGCTTCAAGG GTCTTGGTGA AATGGATGCC AAGGACCTGA AGGAAACCAC GATGGATCCC
AAGACCCGCA AGCTGATCCG CGTCACCATC GACGAGGACG AGCCCGGCGA GACTAGCGAC
CTTGTGGAAC GCCTGATGGG CAAAAAGCCC GAGCTGCGAT TCCAGTACAT CCAGGAGAAC
GCCAAGTTCG TCGAGGAACT GGACGTTTAA
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| Protein sequence | MRHNEIKPHQ RMSSDPHMAD DLLSPSSSDT YDASSIEVLE GLEPVRQRPG MYIGGTDERA
LHHMVAEILD NSMDEAVAGH ANRIEVELHA DYSLTVRDNG RGIPIDPHPK FPDKSALEVI
LCTLHAGGKF SGKAYQTSGG LHGVGSSVVN ALSDSLVVQV AKNKELFEQR FSRGKPLGGV
EKIGAAPNRR GTTVTFHADE QIFGSHRFKP ARLFKLVRSK AYLFSGVEIR WKSAIDDGET
PQEATFHFPG GLRDYLTEVL GKSSVYADAP FAGKVEFREK FGEPGYVEWA INWTPSRDGF
TQSYCNTVPT PEGGTHVAGF WSAILKGIKA YGELVGNKKA GQITRDDLMA GGCALVSCFI
ADPAFVGQTK DRLSTEAAAK MVENSVRDHF DNWLAADTKS AGAILDFLIL RAEERLRRRQ
EKETARKSAT KKLRLPGKLT DCTSKDRSGT ELFIVEGDSA GGSGKGARNR EYQALLPLKG
KILNVLGAAS GKLTSNAEIR DLCEALGVGL GTKFNLDDLR YDKIIIMTDA DVDGAHIASL
LMTFFFTQMR PLIDGGHLYL ACPPLFRLTQ GAKRVYCLDE AERDMWMEKG LGGKGKIDVS
RFKGLGEMDA KDLKETTMDP KTRKLIRVTI DEDEPGETSD LVERLMGKKP ELRFQYIQEN
AKFVEELDV
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