| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1696 |
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| Symbol | |
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| ID | 4078272 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1793112 |
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| End bp | 1793882 |
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| Gene Length | 771 bp |
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| Protein Length | 256 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638007010 |
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| Product | rhomboid-like protein |
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| Protein accession | YP_613691 |
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| Protein GI | 99081537 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0705] Uncharacterized membrane protein (homolog of Drosophila rhomboid) |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.0169703 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 17 |
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| Fosmid unclonability p-value | 0.97401 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTTTCCTC TGCGTGATCA CAACCCCTCC GGCCGAACGC CTTATGTCGT CTACCTGCTG
ATGGCGGCCA ATATTTTGGG CTTTCTCTGG TATTCCACCA GCTTTCCCAC CGACAGAAGC
CTTGCGCTTT TTTACGCCAG CTTCGCCACG GTCCCACGAG AGATCACGAT GGGAGAAGGA
ACACTCACGC TGCTCACCTC CATGTTCATC CACGGCGGGA TCATGCATCT GGCGGGCAAC
ATGCTGTTTC TGTGGATCTT TGGCGACAAC ATGGAAGACG AAATGGGCCA CCTGCCGTTT
CTCGCCTTCT ATCTCATCTG CGGGGTGGGA GCGACGTTGG CTCATGTCTG GTCCGCGCCG
CTCTCGATGG TGCCACTGGT GGGAGCCTCC GGTGCAATTG CGGGCGTCAT GGGCGGCTAC
CTTCTGATGT TTCCAAAGGC CCGCGTCGAT ATTCTCATCA TCCTGATCAT CTTCTTTCGC
ATCATCCCGA TCCCCGCCTT CATCATGCTA GGGCTCTGGC TTGCGATGCA GTTCTTTGGT
GGCCTCAACG CCGATCCGAA CCTGGGCGGT GTCGCTTATT GGGCGCATGC TGGTGGTTTC
TTTGTCGGCC TTGCCCTGAC CGTGCCGCTC TGGATCATAC GCGGGGGGCC ACGGTTCTGG
TCACGCACTC AGGGCCATCC ACCGCATCCT GGAACCAGCT ATAGCGCCAG CCGCATTCCC
CGCGTCCGCC GCCGCAACAC ACCGCCTCGC AGCGGCCCTT GGGGCAAGTA A
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| Protein sequence | MFPLRDHNPS GRTPYVVYLL MAANILGFLW YSTSFPTDRS LALFYASFAT VPREITMGEG
TLTLLTSMFI HGGIMHLAGN MLFLWIFGDN MEDEMGHLPF LAFYLICGVG ATLAHVWSAP
LSMVPLVGAS GAIAGVMGGY LLMFPKARVD ILIILIIFFR IIPIPAFIML GLWLAMQFFG
GLNADPNLGG VAYWAHAGGF FVGLALTVPL WIIRGGPRFW SRTQGHPPHP GTSYSASRIP
RVRRRNTPPR SGPWGK
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