| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1562 |
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| Symbol | |
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| ID | 4075860 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1667347 |
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| End bp | 1669548 |
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| Gene Length | 2202 bp |
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| Protein Length | 733 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006875 |
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| Product | 3-hydroxyacyl-CoA dehydrogenase |
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| Protein accession | YP_613557 |
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| Protein GI | 99081403 |
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| COG category | [I] Lipid transport and metabolism |
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| COG ID | [COG1024] Enoyl-CoA hydratase/carnithine racemase
[COG1250] 3-hydroxyacyl-CoA dehydrogenase |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.150741 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATT TCAAATACGA CGTAGACGCC GATGGCATCG CCATCATCAC ATGGGACGCG
GAAGGCAAGA GCATGAACGT CCTCACCCGC GAGGCCTTTG GCCTGGTGGA GGACTATATC
GACCGTGCGC TTGGCGATGA CGCCGTCAAA GGCGTGGTGA TCACTTCCGG CAAGAAAGAC
TTTGCGGGCG GCATGGACCT GAATGTGTTG GCCACCATCC GCGAGGAATC CGGTGAAAAC
CCGGCTCAGG GCCTGTTTGA TTTTACGATG AATGGCCACC GCATCCTGCG CAAGCTGGAG
CGCGCAGGGA TGGACGCCAA GAACAACAAG GGCGGCAAGC CGATTGCCTG CGCCATCAAT
GGCACCTGTG CAGGCATCGG CACCGAGATC GCGCTGGCCT GTCATTACCG AACCATGACC
GACAACCCAA AGGCCAAGAT CGGCCTGCCG GAGATCCTGC TGGGCATCTT CCCCGGTGGC
GGCGGTACCA TCCGCTATTC GCGCATGGTG GGTGCCGTGA ACGCCGCCCC CGTGCTGCTT
GAAGGCAAGA TGATGGACCC CAAGAAGGCG AAATCCGCGA GCCTTGTGGA TGAGGTTGCC
GCCGATCCGC TGGAAGCGGC GCGTCAGTGG GTGCTCAACG CCAAAGACGC CGATATCGTG
AAGCCCTGGG ATCAGAAGGG CTACAAAATG CCCGGTGGTG CGCCCTATCA CCCGGCGGGG
TTCATGAACT TTGTCGGCGC GTCTGCCATG GTGCATGGCA AGACCCAAGG CGCCTTCCCG
GCGGCCAAGG CGCTGCTCTC GGCGGTCTAT GAGGGCGCAT TGGTGGATTT TGACACCGCG
CTGCGCATCG AGGCGCGCTG GTTCACCCAT GTTCTGATGA ACCCGTCGTC CTCTGCGATG
ATCCGCTCGC TGTTCCTCAA CAAGCAAGCG CTGGAGAAAG GCGCCGTGCG GCCCAAGGGC
ATTGAGGATC AGTCCGTGAA GAAGATCGGC GTGCTCGGCG CAGGCATGAT GGGCGCAGGC
ATTGCACTGG TTTCAGCGCA GGCGGGCATG GAGGTCGTAC TGATCGACCG CGATCAGGAC
GCCGCCGACA AAGGCAAGGC CTACTCTGCC ACCTATATGG ACAAGGGCAT CAAGCGCGGC
AAAGCCACGC CGGAGAAAAA AGAGGCGCTG CTGGCGCAGA TCACCGCAAC AGCAGATCTC
GACGCCCTCA AAGGCTGCGA TCTCATCATT GAGGCGGTGT TTGAAGACCC GGGCGTCAAG
GCCGAGATGA CCAAGAAGGT CGAGGCGATC ATCCCCGAGG ATTGCATCTT TGCCTCCAAC
ACCTCGACCC TGCCGATCAC CAGCCTGGCC GAGGCCTCGG TCCGGCCCGA GCAGTTCATC
GGCATTCACT TCTTCTCTCC GGTTGAGAAG ATGTTCCTGG TGGAGATCAT CAAGGGTGAG
AAAACCGGCG ATCGCGCGGT GGCCAAGGCG CTGGACTATG TACGCCAGAT CCGCAAGACG
CCGATCGTGG TCAATGATGC GCGCTTCTTC TACTGCAACC GCTGCATCAT CCCCTACATC
AACGAGGGCG CAAGGATGAT CACCGAAGGT GTCTCGCCGG TGCTGATCGA CAACGCCGCG
CGCCAGCTTG GCTTCCCGGT GGGGCCGATC CAGCTGACGG ATGAGACCTC GATCGATCTC
GGTGCAAAGA TCGCACGCGC CACCAAGGCG GCGATGGGCG ACGCCTATCC CGAAAGCCCG
GCGGACGATC TGATCTTCTG GATGGAAGAT CAGGGGCGTC TGGGGCGCAA GGCCAATGCG
GGCTTCTTTG ACTATGACGA CAAGGGCAAG CGCGTTGAGT ACTGGAAGGG GCTTGCGGAG
AAATACCCGC TGGCGGAGGT TCAGCCCGAT CTGGTTGAGG TCCAGGAGCG GCTGATGTTT
GCGCAGGTCC TTGAGGCTGT GCGGGCACTG GAGGAAAACG TGCTGATGGA CATCCGCGAG
GGTGACGTGG GCGCGGTTCT CGCCTGGGGC TTTGCGCCGT GGTCCGGTGG ACCGCTCAGC
TGGCTTGACA TCATCGGCAC GCCCTATGCA GCCGAGCGTT GTGACCAACT GGCCGAGGCA
TACGGCGACC GTTTTGCCTG CCCGCCGCTC CTGCGGGAGA TGGCCGAAAA AGGCCAGACC
TTCTATGGCC GGTTTGCGCC GGAAGAGGAT CAAGCCGCCT AA
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| Protein sequence | MTDFKYDVDA DGIAIITWDA EGKSMNVLTR EAFGLVEDYI DRALGDDAVK GVVITSGKKD
FAGGMDLNVL ATIREESGEN PAQGLFDFTM NGHRILRKLE RAGMDAKNNK GGKPIACAIN
GTCAGIGTEI ALACHYRTMT DNPKAKIGLP EILLGIFPGG GGTIRYSRMV GAVNAAPVLL
EGKMMDPKKA KSASLVDEVA ADPLEAARQW VLNAKDADIV KPWDQKGYKM PGGAPYHPAG
FMNFVGASAM VHGKTQGAFP AAKALLSAVY EGALVDFDTA LRIEARWFTH VLMNPSSSAM
IRSLFLNKQA LEKGAVRPKG IEDQSVKKIG VLGAGMMGAG IALVSAQAGM EVVLIDRDQD
AADKGKAYSA TYMDKGIKRG KATPEKKEAL LAQITATADL DALKGCDLII EAVFEDPGVK
AEMTKKVEAI IPEDCIFASN TSTLPITSLA EASVRPEQFI GIHFFSPVEK MFLVEIIKGE
KTGDRAVAKA LDYVRQIRKT PIVVNDARFF YCNRCIIPYI NEGARMITEG VSPVLIDNAA
RQLGFPVGPI QLTDETSIDL GAKIARATKA AMGDAYPESP ADDLIFWMED QGRLGRKANA
GFFDYDDKGK RVEYWKGLAE KYPLAEVQPD LVEVQERLMF AQVLEAVRAL EENVLMDIRE
GDVGAVLAWG FAPWSGGPLS WLDIIGTPYA AERCDQLAEA YGDRFACPPL LREMAEKGQT
FYGRFAPEED QAA
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