| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1551 |
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| Symbol | |
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| ID | 4075849 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1658100 |
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| End bp | 1659422 |
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| Gene Length | 1323 bp |
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| Protein Length | 440 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638006864 |
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| Product | MATE efflux family protein |
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| Protein accession | YP_613546 |
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| Protein GI | 99081392 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0534] Na+-driven multidrug efflux pump |
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| TIGRFAM ID | [TIGR00797] putative efflux protein, MATE family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 0.959023 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCGGAGG CGTCAGGCCC CATCACCCAT TCCCGGGTGC TCAAGATCGC GTTGCCGATT
GTTTTGTCCA ATGCCACCGT GCCGATCCTC GGCGCCGTCG ACACCGGCGT GGTGGGACAA
CTTGGCGAAG CGGCCCCGAT CGGAGCGGTG GGCGTTGGCA CGGTCATTCT GTCGACGATC
TACTGGGTCT TTGGCTTTTT GCGGATGGGC ACCACCGGGC TGGCCTCGCA GGCGCGTGGC
GCCGGCGATC TGGCTGAGAC GGGCGCGCTG CTGATGCGGG GGCTGCTCTT GGCCTTTGGG
GCGGGTGCGT TTTTCATTGT TGCTCAGGCG CTTGTGTTCT GGGGCGCATT TACGATTGCC
CCTGCCAGCG CCGAGGTCGA GGAACTGGCG CGGCGCTATC TCGAGATCCG AATCTGGGGC
GCGCCCGCAA CCATCGGGCT TTATGCGGTG ACAGGCTGGC TGATCGCCAT CGAGCGCACC
CGCGCCGTGT TCCTGCTGCA GATCTGGATG AATGGGCTCA ATATCCTGCT GGATCTGTGG
TTTGTGCTCG GGCTCGACTG GGGGGTCGAG GGCGTGGCCA TTGCGACCCT GATCGCAGAG
TGTTCGGGGC TGGTGCTTGG ACTTTGGTAT TGCCGCTCAG CCTTTGCGGG CGATCAATGG
CATGACTGGG GCCGGATCTT TGACCGTGCG CGCCTCAAGC GGATGGTTCA GGTCAATGGC
GACATCATGG TGCGTTCGGT GCTGCTCACA CTGTCGTTCA CCACATTCTT GTTTCTCAGC
GCGGATATGG GCGATGTGCG GCTCGCCTCC AATCAGGTGT TGATTCAGTT TCTGCACATC
ACGGCCTTTG CGCTCGACGG GTTTGCCTTC AGCGCCGAGG CGCTGGTGGG TGGGGCGGTC
GGGGCGCGGG ATCGTGGTCG GCTGCGTCGC GCCGCATTGG TATCGAGCTA TTGGGGCATC
GGCTTTGCCG TGGCGCTCGG GGTGGGGTTC TGGCTGTGGG GGCCGTGGAT TGTTGACCTG
ATGACAACCG CACCCGACGT GCGCGAGACC GCGCGCGCCT ACCTGATCTG GCTGGCGTTT
GCGCCACTTC TGAGTGTCGC AAGCTATATG TTTGACGGGA TCTTTATCGG CGCGACCTGG
ACACGCGACA TGAGGATTGC CGCTTTGCAG TCGGTGGCTG TTTACGGCGT TGCGCTTGCA
ATTTGCGTGC CGATGTTTGG AAACCATGGA TTGTGGATGG CGCTGATGGT GCTCAATGTC
ACACGCGCGC TGACTCTGGC GCTGCGCTAC CCAAGACTGG AGGCCGGCAT CACCGCGCCC
TGA
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| Protein sequence | MSEASGPITH SRVLKIALPI VLSNATVPIL GAVDTGVVGQ LGEAAPIGAV GVGTVILSTI
YWVFGFLRMG TTGLASQARG AGDLAETGAL LMRGLLLAFG AGAFFIVAQA LVFWGAFTIA
PASAEVEELA RRYLEIRIWG APATIGLYAV TGWLIAIERT RAVFLLQIWM NGLNILLDLW
FVLGLDWGVE GVAIATLIAE CSGLVLGLWY CRSAFAGDQW HDWGRIFDRA RLKRMVQVNG
DIMVRSVLLT LSFTTFLFLS ADMGDVRLAS NQVLIQFLHI TAFALDGFAF SAEALVGGAV
GARDRGRLRR AALVSSYWGI GFAVALGVGF WLWGPWIVDL MTTAPDVRET ARAYLIWLAF
APLLSVASYM FDGIFIGATW TRDMRIAALQ SVAVYGVALA ICVPMFGNHG LWMALMVLNV
TRALTLALRY PRLEAGITAP
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