Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1507 |
Symbol | |
ID | 4077063 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1612226 |
End bp | 1614916 |
Gene Length | 2691 bp |
Protein Length | 896 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638006820 |
Product | periplasmic sensor signal transduction histidine kinase |
Protein accession | YP_613502 |
Protein GI | 99081348 |
COG category | [E] Amino acid transport and metabolism [R] General function prediction only [T] Signal transduction mechanisms |
COG ID | [COG0591] Na+/proline symporter [COG5002] Signal transduction histidine kinase |
TIGRFAM ID | |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.808684 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 17 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGACCTCGC TCAACCTTCT GGCAGTCGTG AGCATTGGCT ATGTGGCCCT GCTGTTCATG GTGGCCTTTT GGGCGGACCG GCAGGCGCTG CGGGGGCGCA GCGCGCGCTT TATGCGCTCG CCACTGATCT ACACGCTGTC GCTGTCGATT TACTGCACGG CCTGGACGTT TTACGGCGCA GTTGGCTATG CGGCGCGCTC CGGCATGGAA TATGTCACCA TCTATCTGGG GCCGACCCTG GTGATGATCG GCTGGTGGTG GGGACTGCGC AAACTGGTGC GGGTCGGGCG CAGCCAGCGC ATCAGTTCGA TTGCCGACCT GCTCTCGGCG CGATACGGCA AATCCAACGT GCTGGCCATC GGAGTCACGG TGCTCGCGGT TGTGGGGGTC ACGCCCTATA TTGCGCTGCA ATTGCAATCT ATCACCCTTT CGGTCGCGAT CTTTGCCGAG GCCGACCCCT CTCGCGGCCA CAATGAATCC GGCACGGTGT TCTGGATTGC GATGGGCCTT GCCTGTTTTG CCATCCTCTT TGGGACGCGC AACCTCAACG CCAACGAGCG CCACCACGGC GTCGTCATGG CCGTCGCCCT TGAGGCGGTG GTCAAGCTCA TTGCGCTGGT GGCGGTGGGC GTGTTCGTGG TCTGGGGCAT CGCTGGCGGG ATCGAGGAAA CTCTTGCCCG CATCGACCGC TCTCCCATCG GGCATTGGCA GGTGGACGGC GGGCGCTGGA CGGCGATCAC CTTTCTGGCA GCGGCGGCCT TTGTCTGCCT GCCGCGCATG TTTCAAGTGA TGGTGGTGGA GAACGAGGAC GAACGCCACC TACGGGTCGC GGCCTGGGCC TTTCCGACTT ATCTCCTGCT CATTTCGATC TTTGTGGTGC CAATCGCGGC GATCGGGCTT GAGCTTTTGC CGCAGGGCTC CAATCCGGAC CTCTTTGTGC TCGCCTTGCC CCTGTCCCAA GGGCAGAACG GTCTGGCCAT GCTGTCATTT CTGGGCGGGT TTTCGTCGGC CACCTCGATG GTGATTGTCG CCGCCATGAG CCTGTCGACG ATGGTTTCAA ACCACATTGT GATGCCGATC TGGTTGCGCT CGACCGGGGC CTTCAAAGGG GCGTCGGTTT CTGGGGATGT GCGCTCGGTC GTGCTTTTTG CGCGGCGTTT TTCCATCGCC GCGATCATGG CGCTCGGCTA TGCCTACTAT CAGATCTCGG GCGGCGGCGC AGCGCTGGCC GCCATCGGTC TGATCGCTTT TTCGGGCATC GCGCAGATCC TGCCCGCGCT GGTCGGAGGG CTGTTTTGGC GCGGTGCCAC ACGCGCAGGC GCGCTTGCGG GGCTGACCAT CGGCTTTGTG GTCTGGAGCT ATACGCTCTT GCTGCCAGAG GTCGCCGGAG GCGTCTTTTC CAATGCCACG CTGTCGGAAG GGCCGTTTGG AGTCGGATGG TTACGCCCGC AGGCGCTCTT TGGGATCGAG GGCTTTGACC CCATCGTCCA TTCTGTCCTC TGGTCCATGA GCCTCAATGT GGCAGCCTTT GCGCTGGTCT CGGTCCTGAG CTTTCCAAGC CCCATGGAGC GTCTCCAGGG CGCGCAGTTC GTGCATGTCT TTGACCACTC GGCGGGTCCC GGTGGCTGGA CTGGCTCGGT GGCCCAAAGC GAAGACCTGA TGATTATGTC CCAACGCATC CTCGGCCCCG AAGAGGCACA GAAGTTCTTT CAGGCGGCGC TGGAACGTCA AGGCGGCCCG GGGCCATTGC CGGAGCCGAC ACCGAGTTTT CTCGAGCAAC TGGAGCGCGA ACTCAGCGCC TCGATTGGGG CGGCGGCTGC CCATGCGATG ATCGGCCAGA TTGTCAGCGG TGCAGCGGTG TCCGTCGAGG ATCTCCTGGC GGTGGCGGAC GAATCGGCAC AACTTCTGGA ATACTCGAGC CGCCTTGAGG CGCAATCAAA AGAGCTCTCG CGCACCGCGC TGCAGTTGCG GGAGACCAAC CAGAAGCTAA CCCGTCTCTC TGAGCAGAAA GATGCGTTTC TCTCTCAGGT CAGCCACGAG CTGCGCACGC CGATGACATC GGTACGTGCC TTTTCCGAAA TCCTGCGCGA TGAGCCTTCT CTCAATCCCG CTGAGCAGCA TAAATACGCA TCGATCATCC ATGACGAGGC CCTGCGCCTC ACAAGGTTGC TCAATGACCT GCTGGATCTG AGCGTTCTGG AGAGCGGGTC CGTTTCGCTC AATGTTTCGC GCCGGCCTCT GGGCGATGTG CTGGATCATG CGTTGTCCTC GGCGCTGGCG GGCGCGGAGG GTCCGCTGCG GGTGGTGCGG GATCGCAATT CCGAGGCTGT GGAGATTGAA ACCGACGTCG ACCGGCTGGC GCAGGTCTTC ATCAATCTGA TCGCCAATGC GCAGAAATAC TGCACTGCAG CTGCGCCGGA GTTGCGCATC AATGTGCGGG TCTTTGCCAA CCGGGTAGAT GTTGAATTCA TCGACAATGG CGCTGGAATC CCTGCGGATT TTCGCGAAAT GATCTTTGAG AAATTCTCAC GCGTGACACC CGAACGCGCA GGAGGGGCAG GTCTTGGGCT GGCGATCTGC AAGGAGATCA TGCGCAAGCT GGGTGGTGAT ATTCATCTGC TTGCGACGCA AAAAGGGGCC GCTTTTCTGG TCTCTTTGCC ACGAGAGACG AAAATAGAAG AAATCCTCTG A
|
Protein sequence | MTSLNLLAVV SIGYVALLFM VAFWADRQAL RGRSARFMRS PLIYTLSLSI YCTAWTFYGA VGYAARSGME YVTIYLGPTL VMIGWWWGLR KLVRVGRSQR ISSIADLLSA RYGKSNVLAI GVTVLAVVGV TPYIALQLQS ITLSVAIFAE ADPSRGHNES GTVFWIAMGL ACFAILFGTR NLNANERHHG VVMAVALEAV VKLIALVAVG VFVVWGIAGG IEETLARIDR SPIGHWQVDG GRWTAITFLA AAAFVCLPRM FQVMVVENED ERHLRVAAWA FPTYLLLISI FVVPIAAIGL ELLPQGSNPD LFVLALPLSQ GQNGLAMLSF LGGFSSATSM VIVAAMSLST MVSNHIVMPI WLRSTGAFKG ASVSGDVRSV VLFARRFSIA AIMALGYAYY QISGGGAALA AIGLIAFSGI AQILPALVGG LFWRGATRAG ALAGLTIGFV VWSYTLLLPE VAGGVFSNAT LSEGPFGVGW LRPQALFGIE GFDPIVHSVL WSMSLNVAAF ALVSVLSFPS PMERLQGAQF VHVFDHSAGP GGWTGSVAQS EDLMIMSQRI LGPEEAQKFF QAALERQGGP GPLPEPTPSF LEQLERELSA SIGAAAAHAM IGQIVSGAAV SVEDLLAVAD ESAQLLEYSS RLEAQSKELS RTALQLRETN QKLTRLSEQK DAFLSQVSHE LRTPMTSVRA FSEILRDEPS LNPAEQHKYA SIIHDEALRL TRLLNDLLDL SVLESGSVSL NVSRRPLGDV LDHALSSALA GAEGPLRVVR DRNSEAVEIE TDVDRLAQVF INLIANAQKY CTAAAPELRI NVRVFANRVD VEFIDNGAGI PADFREMIFE KFSRVTPERA GGAGLGLAIC KEIMRKLGGD IHLLATQKGA AFLVSLPRET KIEEIL
|
| |