| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1495 |
|---|
| Symbol | |
|---|
| ID | 4077051 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 1600230 |
|---|
| End bp | 1601147 |
|---|
| Gene Length | 918 bp |
|---|
| Protein Length | 305 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 60% |
|---|
| IMG OID | 638006808 |
|---|
| Product | binding-protein-dependent transport systems inner membrane component |
|---|
| Protein accession | YP_613490 |
|---|
| Protein GI | 99081336 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0600] ABC-type nitrate/sulfonate/bicarbonate transport system, permease component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 0.473602 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 21 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAGACGT TTATGGCCGT CCTAACCGTG GTCGCGGGGA TTATTGGCCT CTGGTATCTT
GCCTGCGTGC CGATGAACAT CAAGGGGGTG CTGGACGCCG CTGAGCGGGC AGGGGAGCAG
GTGGAGCCTG CAACCGCGCG TGAGCGTCGA GACGCTTCGG CACTTGGACT TGTGGTTCAG
AACAGCTTTG CGATTTCGCG TGCATGGTCG GTGGAGCGCC CGCGCTTGCC GGCGCCGCAT
CAGGTCGCCA CAGAGCTCTG GGACACCACG GTGATGAAGA AGATCACCTC CAAACGCAGC
CTGATCTATC ATGGGCAAGT GACGCTCTCC GCGACGCTTC TTGGATTTGC GATCGGCACA
GGGCTTGGCA TCCTGCTTGC GGTCGGGATC GTGCATTCCA GAGTCATGGA CATGTCGGTG
ATGCCCTGGG CCATCGTGAG CCAGACCATT CCGATCATCG CGCTGGCGCC AATGATCATC
GTCGTCTTGT ATTCCATTGG CGTACAAGGG CTTTTGCCCA AGGCGATCAT CGCCGCCTAC
CTCAGTTTCT TTCCTGTGGT GGTCGGTATG GTCAAAGGCT TGCGCAGCCC GGATCACATG
CAGCTTGATC TGATGAAGAC CTACAACGCC TCGCAGGGGC AGGTGTTCTG GAAGCTGCGT
CTGCCCTCGT CGATGCCTTA TCTCTTTGCC TCGCTCAAGA TCGGCATTGC GGCCTCGCTC
GTGGGGGCCA TCGTTGGGGA ATTGCCGACT GGTGCGGTCG CAGGGCTTGG CGCGCGGCTT
CTGGCAGGAA GCTACTACGG TCAGACGGTG CAGATCTGGT CGGCGCTTTT TGCAGCGGCC
ATCTTGGCTG CGGCTCTGGT GGCGCTCCTC GGAGTACTCG AGCGCATGCT GCTTGGGCGT
ATGGGGGTGA AACCATGA
|
|---|
| Protein sequence | MKTFMAVLTV VAGIIGLWYL ACVPMNIKGV LDAAERAGEQ VEPATARERR DASALGLVVQ
NSFAISRAWS VERPRLPAPH QVATELWDTT VMKKITSKRS LIYHGQVTLS ATLLGFAIGT
GLGILLAVGI VHSRVMDMSV MPWAIVSQTI PIIALAPMII VVLYSIGVQG LLPKAIIAAY
LSFFPVVVGM VKGLRSPDHM QLDLMKTYNA SQGQVFWKLR LPSSMPYLFA SLKIGIAASL
VGAIVGELPT GAVAGLGARL LAGSYYGQTV QIWSALFAAA ILAAALVALL GVLERMLLGR
MGVKP
|
|---|
| |