| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1488 |
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| Symbol | |
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| ID | 4077044 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1591016 |
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| End bp | 1593580 |
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| Gene Length | 2565 bp |
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| Protein Length | 854 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006801 |
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| Product | hemolysin-type calcium-binding region |
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| Protein accession | YP_613483 |
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| Protein GI | 99081329 |
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| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
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| COG ID | [COG2931] RTX toxins and related Ca2+-binding proteins |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 15 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 22 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACGA TGAACTCAGG CCTCGGCGGT GCGACGGGGT ATGGTGAAAA CAGCTTTGTC
ACGAATGGGC CGGACAGCGG CACCCTCGAT GATGGCAGCG TTTATGTTGA TATCACCTCG
GTGTTCGGCC CTGGAGGGAT CACGCTCTTT GGCCAGAACT ATACCGGGTT CAACGTCGGC
ACCAACGGTG TCATTGGTTT TGATTGGGAC AGCACCACCT ACAACCCCGA GGGCCTCGAA
GGTTTTAACC AAGGCCCACT GATCGCACCG CTGTGGACCG ATATGGATCT CAGCCAGGGC
GGCGACATCC TGTGGGATCT CGACACGGTC AACGGCACGG TCACGATCAC CTGGCTCGAT
GTTGCCCCCT CTTCGGGCGC CGGCACGAAC TCCTTTCAGG TTGTGCTGAC CGATACAGGC
GGCGGCAACT TTGATCTCGA GTTTATCTAT GAGGACATCC AGTATGGTGA TGGCGACACG
CTCGGCAACA GCGTCGGCCT GACCGATGGC AATGGAAATG TCTACGAACT CGAAGGCTCA
CGCGATACCA ATGACGCCAC CCAATACGAG ACCACAAGCT TTGACAGTGG CCCGGCCCCG
GGTCATTTCT CGACCTCGGT TGTAGATGGC ACACCGGACG TCTATTCCAT CGACGGCACC
TCCGGCGCGG ACAACATGGA CGTCGGCTAT ACCGACGCCG ATGGGCAGGA CATCACCAAT
CAGGATGACT ACATCCTTGC TGGCGACGGC AATGACACCA TTCGCGGAGG CGAGGGAGAC
GACACGATTG TCGGCGGCGC TGGCGATGAT GTGATCTACA GCGGCAGCGA TTCAGACGCT
GCGGCGCCGA CCTATGTGCA GGTGTACAAC GGCGACAATT ATCACGGCAC AACCGGTCAG
GACTTCTATC ACTGGAATGC GGAAACAGGC AGCAACGCCG TCATCCGCAT GAACAATACG
CCCACCGAGT CGGGCTCTGG CGATGGCGAG GCTGACTATG TGGTTGTCGG AACCACCAAC
AACACCGGCA CCCTGACCAT TGGCGACTTT GACGTCGGCA ATGACCGGAT CGTACTGCCC
GAGGCCTATG CTTCGATTTC GATGACCAAC GCGTCCTCGC CGACAGATTA TTATTCCGAC
ATTACAATTA CATATGCGAA CGGCAATACG CAGAGCTTTG TGATCTATCA CGACGGCTCC
ACGCCGCTTA CTGCCAGCGA GGTCTTCACC ACCGAGGTTC CGACTGTCAC TGCAAGCGAC
AACGATCAGC TCATCGGGGG CGAAGGCGAC GACACTTTTA TCCTCGAAGA TCACTCCGGG
AATGACACGA TCGATGGGGG TGCGGGTGAA GGCGATCACA TTGACGCGTC CAACCTGTCT
GGGCCGGTTT CGGTTACCTA TTCGGGGGAT GAGGCCGGGG ACATCGTCAG CGGGTCGGAT
ACGATCACCT TCAGCGACAT CGAGCAGATC ACCCTGACCA ATCAGGCTGA TTTTTTTGAT
GCCAGCGCTG CTGCCACCGG CGTATCTCTG GATGCAGGGA CCGGGGATGA CACCATCATC
GGCTCCAGCG GCAATGACAC GCTCTCCAGC GGCATCGGCC ATGACACCAT CACCGGGGGC
CTGGGTGATG ACGTGATGAC AAGCGCCGGT GGGGAGGACC TCTTTGTCCT TACCACCAGC
GGCGGGCGCG ACACCATCAC CGATTTTGGT ACCGGCGATC TGGATGGCGA TGGGCGCTTC
AACGACCAGC TCGATGTGTC CAATCTCTCG GGCGGTACAG GACCTGGCGG CAGCGTCACA
CGAAACGATG TTGTCGTCAG CGACGATGGC AGCGGCAATG CGGTGCTGAC GTTCCCGGAT
GGCGAGCAGC TGGTGCTCCT TGGCGTGCCA CCGACCTTTA TGTCTGCCCC GGCCAATCTC
TATTCTGCGG GCATTCCCTG TTTCACCACG GGCACACTGA TCGACACTGC GACGGGGCCA
CGTCCGGTTG AGACACTCCG GGTCGGCGAT CTGATGCAGA CGGCTGATGA GGGCTGCCAA
CCCGTGATCT GGATTGGAAC AACCCATGTT CCCCATAGCG CACTCATGTC CAATCCGCGG
CTGAGGCCCA TCACACTGCA CCCAGGCGGG AGCCTTCAAC TGGCGCAGCC CATGACGGTG
TCGCGTCAGC ACCGGTTCGT GTTCGCCGAC CCACAGGATC GGACCGAGCG TTTCCTGCGC
GCCAATCAAC TCCTTCAGGT AGCGCCGGAT CAGGTCAGTG TTGATTGCCC TCTAGGCGGC
GTCACCTATG TTCATGTCCT GCTTGAGCGG CACCAGGTCT TGTTTTCCGG CGGCGTCGCA
ACGGAGAGCT TTTTCCCCGG CCCCTGGTCT TTGCGCGGGC TCTCGCCTCG CTCCGTGGCA
AAGCTCGCCG CTTTGCTGCC CCGGTTGCGC TATTTGCACG GGTTGCCCCC CAAACTCGCG
AGAATGGCGA CCGAGCAGGT CTATGCTCCG CTGGCACGCG ATGAAATCAG CACCGCAGAG
TTGCGAGAGA GACTGCGCGC CACCCGTCTG AAACAAAGCG CCTGA
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| Protein sequence | MATMNSGLGG ATGYGENSFV TNGPDSGTLD DGSVYVDITS VFGPGGITLF GQNYTGFNVG
TNGVIGFDWD STTYNPEGLE GFNQGPLIAP LWTDMDLSQG GDILWDLDTV NGTVTITWLD
VAPSSGAGTN SFQVVLTDTG GGNFDLEFIY EDIQYGDGDT LGNSVGLTDG NGNVYELEGS
RDTNDATQYE TTSFDSGPAP GHFSTSVVDG TPDVYSIDGT SGADNMDVGY TDADGQDITN
QDDYILAGDG NDTIRGGEGD DTIVGGAGDD VIYSGSDSDA AAPTYVQVYN GDNYHGTTGQ
DFYHWNAETG SNAVIRMNNT PTESGSGDGE ADYVVVGTTN NTGTLTIGDF DVGNDRIVLP
EAYASISMTN ASSPTDYYSD ITITYANGNT QSFVIYHDGS TPLTASEVFT TEVPTVTASD
NDQLIGGEGD DTFILEDHSG NDTIDGGAGE GDHIDASNLS GPVSVTYSGD EAGDIVSGSD
TITFSDIEQI TLTNQADFFD ASAAATGVSL DAGTGDDTII GSSGNDTLSS GIGHDTITGG
LGDDVMTSAG GEDLFVLTTS GGRDTITDFG TGDLDGDGRF NDQLDVSNLS GGTGPGGSVT
RNDVVVSDDG SGNAVLTFPD GEQLVLLGVP PTFMSAPANL YSAGIPCFTT GTLIDTATGP
RPVETLRVGD LMQTADEGCQ PVIWIGTTHV PHSALMSNPR LRPITLHPGG SLQLAQPMTV
SRQHRFVFAD PQDRTERFLR ANQLLQVAPD QVSVDCPLGG VTYVHVLLER HQVLFSGGVA
TESFFPGPWS LRGLSPRSVA KLAALLPRLR YLHGLPPKLA RMATEQVYAP LARDEISTAE
LRERLRATRL KQSA
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