Gene TM1040_1474 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1474 
Symbol 
ID4077771 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1574347 
End bp1575504 
Gene Length1158 bp 
Protein Length385 aa 
Translation table11 
GC content60% 
IMG OID638006785 
Productribonuclease D 
Protein accessionYP_613469 
Protein GI99081315 
COG category[J] Translation, ribosomal structure and biogenesis 
COG ID[COG0349] Ribonuclease D 
TIGRFAM ID[TIGR01388] ribonuclease D 


Plasmid Coverage information

Num covering plasmid clones17 
Plasmid unclonability p-value0.366853 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones21 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAACTC TGACCACCAC CGACGAGCTG CGCGCCTTTT GCCAAGAGGC CGCGAAATAC 
CCTTATGTGA CGGTGGACAC CGAGTTTCTG CGAGAGCGCA CCTATTACTC TAAGCTTTGC
CTGATCCAGA TTGCCTATCG CGGTGATGGG GAAACCGACG CCGTGCTGGT TGACCCGCTT
TCCGGGGATT TGTCGCTCGA ACCCTTGTAC GAGCTTTTCC GCAATGAGGA TGTGGTAAAG
GTCTTTCACG CCGCGCGGCA GGATCTGGAG ATTTTCTGGG TGGATGCGGG CGTTTTTCCA
AAACCGCTGT TTGACACCCA GGTTGCGGCC ATGGTGTGCG GCTTTGGCGA GCAGGTCGGC
TACGAGACGC TGGTGCGCAA GATTTGCAAG CAAGGCCTTG ATAAGACATC CCGCTTTACA
GACTGGTCCC GCCGTCCACT CTCGGATGCG CAAAAGACTT ATGCTCTGGC GGATGTCACC
CATCTGCGCC AGATATACGA GCATCTGCGC AAAGAGCTCG ACAAGACCAA GCGCAGCCAT
TGGGTTGCCG AGGAGTTGCA GGTCCTGACC GACCCCGCAA CCTATAACAT TCAGCCGCGT
GAGGCTTGGC GCCGGGTGAA AACCCGCACC AACTCCGGGC GTTTCCTTGC AGTGGTGCGC
GAGCTGGCGG CCTTTCGCGA AGAATATGCG CAAACCAACA ATGTGCCGCG CAATCGCGTC
TACAAGGATG ATGCCCTGGT GGAACTGGCT TCCACCAAGC CCCGGACCGC GTCGGATCTG
GGGGGATCAC GCCTGTTGCT GCGGGAGGCG CGCAAAGGCG CCATTGCCGA AGGCATTCTA
AAAGCGGTCG AGCGCGGTGT GAACTGTCCG CAGGACGACA TGCCTCAGGC GGATCGCTCG
CGCGAGAAAA TGCAGATCAA TGGCGCACTT GCCGATCTGC TGCGGGTCCT GCTCAAGGCC
AAGACCGAGA CCTCTGGCGT GGCGGCGAAA CTGATCGCCC CTTCGGCGGA TCTGGATGCA
ATCGCCGCCG GGGAGCGCGA TGTTCCTGCG CTAAAAGGCT GGCGGCACGA GGTCTTTGGC
GCGGATGCGT TGCGCCTGTG CAATGGAGAG ATTGCGCTCG CGGCCAAAGG CCAGCAGGTG
AAGGTTGTTG ACCTCTAG
 
Protein sequence
MKTLTTTDEL RAFCQEAAKY PYVTVDTEFL RERTYYSKLC LIQIAYRGDG ETDAVLVDPL 
SGDLSLEPLY ELFRNEDVVK VFHAARQDLE IFWVDAGVFP KPLFDTQVAA MVCGFGEQVG
YETLVRKICK QGLDKTSRFT DWSRRPLSDA QKTYALADVT HLRQIYEHLR KELDKTKRSH
WVAEELQVLT DPATYNIQPR EAWRRVKTRT NSGRFLAVVR ELAAFREEYA QTNNVPRNRV
YKDDALVELA STKPRTASDL GGSRLLLREA RKGAIAEGIL KAVERGVNCP QDDMPQADRS
REKMQINGAL ADLLRVLLKA KTETSGVAAK LIAPSADLDA IAAGERDVPA LKGWRHEVFG
ADALRLCNGE IALAAKGQQV KVVDL