Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1447 |
Symbol | |
ID | 4077744 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 1545359 |
End bp | 1546090 |
Gene Length | 732 bp |
Protein Length | 243 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638006758 |
Product | GntR family transcriptional regulator |
Protein accession | YP_613442 |
Protein GI | 99081288 |
COG category | [K] Transcription |
COG ID | [COG2186] Transcriptional regulators |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 24 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.384199 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGAAGATCG ATCCCAAAAG CAGCGCTGAT CTCTCCGCTC AGATTGCCAC TGCAATCCGC GACGCCATCA TCTCTGGCGC ACTGATTGTC GACGAACGCC TGCCCTCGGA GGCCGAACTG GCCGAGCAGT TCCAGGTTTC CCGCGCCACC GTGCGCGAAG GGTTGAAGAG GCTCGCAGCG CAATCGCTGA TCCGCACACA ACGCGGCGCG TCTGGCGGGG CTTTTGTGAA TCGGCTGAGT TTTGAGGATG CTTACAGCCA GCAGATCACC ACCTCGACCC TTCTGCTCAG CATGAATGCG GTGAGTTTCG ATACGGCCTG CGAAGCGCGC TATGCGCTGG AGCGGGCCTG CGCGCCGCTT TCTGCAGAGC GTCGCACCGC CGACCAGCTG GCCACCATGC GCGCCGAGAT CTTTCGACAG GGTCAGCCCG GCCTCACGGA TGAGGCCTTT TGCGCGTCTG ACGTGGCCTT TCACCGCGCT CTGGTGGATG GCGCGCATAA TCCGGTCCTG TCCTACCAGC TTGCCGGTGC CGTCGAGGCG ATGCAGCCCC TCATGAACAT GATCACCTTC ACCGCAAGAG ACCGCGCCAC CATTCTTGCG CTGCACACCA CCGTCGCCGA TGCCATCGAA GCCGGCAAGG GAGACGCGGC AGTCGCGGGT CTCAGCGCAT TAGAGGAGGA AACGCGCAAC CTCGCCGCCG ATGTCTTTGC CCGCCGCGCG ACAAAACGCT GA
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Protein sequence | MKIDPKSSAD LSAQIATAIR DAIISGALIV DERLPSEAEL AEQFQVSRAT VREGLKRLAA QSLIRTQRGA SGGAFVNRLS FEDAYSQQIT TSTLLLSMNA VSFDTACEAR YALERACAPL SAERRTADQL ATMRAEIFRQ GQPGLTDEAF CASDVAFHRA LVDGAHNPVL SYQLAGAVEA MQPLMNMITF TARDRATILA LHTTVADAIE AGKGDAAVAG LSALEEETRN LAADVFARRA TKR
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