Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_1410 |
Symbol | |
ID | 4078040 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 1503751 |
End bp | 1504938 |
Gene Length | 1188 bp |
Protein Length | 395 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 638006720 |
Product | 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
Protein accession | YP_613405 |
Protein GI | 99081251 |
COG category | [I] Lipid transport and metabolism |
COG ID | [COG0743] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
TIGRFAM ID | [TIGR00243] 1-deoxy-D-xylulose 5-phosphate reductoisomerase |
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Plasmid Coverage information |
Num covering plasmid clones | 22 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 11 |
Fosmid unclonability p-value | 0.0848317 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGCATGGGG TCACTATGAA AAAGATATCG ATTTTTGGGG CAACGGGATC AATCGGGCAG AGCACCATTG ACCTGATCCG CCGCGCCCCC GACGCCTATG ACGTGGTGGC GCTCAGCGGT GGGCATAATG TGGCGCAGCT GGCGCGGGAC GCCATAGAAC TGCAAGCAGA TATAGCGATC ACGGCGCATG ACGCCCGGCT TGAGGAGCTG CGCTCCGCGC TTGCGGGCAG TGGCGTTGAA GCGGCCTCGG GCGCGGCGGC CCTGGTGGAG GCCGCAAGCC GTCCTGCGGA TTGGATCATG TCGGCCATCG TGGGCGCTGC GGGTCTTGCG CCGGGCCTCA AAGCGCTGGA GCAGGGCACG ACGCTGGCGC TGGCCAACAA GGAATCCCTC GTCTGTGCGG GCGCGCTTTT GATGCAGACC GCTGCAGATC ACGGCGCGCG GATTTTGCCC GTGGACAGTG AGCACTCAGC TGTGTTTCAG GCGCTTGTCG GCGAACGTAT CGAAGAGGTC GAGCGTATCA TCATCACTGC GTCGGGCGGT GCCTTTCGGG ACTGGCCGCT GGAACGGTTA AAAACGGCAT CATTGGCCGA GGCCTCTTCT CATCCCAATT GGGACATGGG GCAGCGGATC ACGATCGACA GTGCGTCGAT GTTCAACAAG GCGCTTGAAG TCATTGAAAC CAGAGAATTC TTTGGTGTTG CGCCTGAGCA GATCGAGGTA TTGGTGCATC CCCAGTCGCT GGTTCATGCG CTGGTCGGAT TTCGCGATGG TGCGCTCATG AGCCACCTTG GCGCGCCGGA TATGCGCCAT GCCATCGGCT ATGCGTTGCA CTGGCCGGAC CGCAATGCGC TGCCGGTGGC GCGGCTCGAT CTGGCCGCAA TCGGCCAGCT GGAATTTCGC GCGCCCGATC TTCAGCGCTA TCCGGCGCTG AGGCTTGCGC AAGAGGTCAT GCGGCGTGGC GGGCTGAGCG GGGCGGCCTT CAACGGCGCC AAGGAACGCG CGCTCGATCA CTTTATCGCG GGGCGCATTG GTTTTCTGGA CATGGCCAGC CTAACTGAAG AAGGACTGGC GACGCTCGAG GCCCAACCGG GCCTTATTGA TGCCTCAATG ACACTTGAAA ACGTCACCCG AGTTGACGAT CTGGCGCGTA GGGCGGTGGA TCAGGTCGTG ACGCAACGAA CAGGATAG
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Protein sequence | MHGVTMKKIS IFGATGSIGQ STIDLIRRAP DAYDVVALSG GHNVAQLARD AIELQADIAI TAHDARLEEL RSALAGSGVE AASGAAALVE AASRPADWIM SAIVGAAGLA PGLKALEQGT TLALANKESL VCAGALLMQT AADHGARILP VDSEHSAVFQ ALVGERIEEV ERIIITASGG AFRDWPLERL KTASLAEASS HPNWDMGQRI TIDSASMFNK ALEVIETREF FGVAPEQIEV LVHPQSLVHA LVGFRDGALM SHLGAPDMRH AIGYALHWPD RNALPVARLD LAAIGQLEFR APDLQRYPAL RLAQEVMRRG GLSGAAFNGA KERALDHFIA GRIGFLDMAS LTEEGLATLE AQPGLIDASM TLENVTRVDD LARRAVDQVV TQRTG
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