| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1356 |
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| Symbol | hfq |
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| ID | 4076373 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1448057 |
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| End bp | 1448296 |
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| Gene Length | 240 bp |
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| Protein Length | 79 aa |
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| Translation table | 11 |
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| GC content | 51% |
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| IMG OID | 638006666 |
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| Product | RNA-binding protein Hfq |
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| Protein accession | YP_613351 |
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| Protein GI | 99081197 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG1923] Uncharacterized host factor I protein |
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| TIGRFAM ID | [TIGR02383] RNA chaperone Hfq |
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| 
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Plasmid Coverage information |
| Num covering plasmid clones | 25 |
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| Plasmid unclonability p-value | 0.950341 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGGCTTCGG ACAGACAGAA TCTTCAGGAC GCTTTCCTGA ACCACGTTCG CAAAACAAAA
GTTCCAGTCA CAATTTTCTT GATCAACGGT GTGAAACTGC AGGGCGTGAT CACCTGGTTC
GACAACTTCT GTGTGTTGCT GCGCCGCGAT GGCCAGTCGC AGCTTGTCTA CAAGCATGCG
ATTTCCACCA TCATGCCGGC CCAGCCCATC AGCCTATATG AAGGTGAAGA CTCCAATTGA
|
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| Protein sequence | MASDRQNLQD AFLNHVRKTK VPVTIFLING VKLQGVITWF DNFCVLLRRD GQSQLVYKHA
ISTIMPAQPI SLYEGEDSN
|
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