| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1232 |
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| Symbol | alaS |
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| ID | 4076347 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1326722 |
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| End bp | 1329430 |
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| Gene Length | 2709 bp |
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| Protein Length | 902 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006540 |
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| Product | alanyl-tRNA synthetase |
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| Protein accession | YP_613227 |
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| Protein GI | 99081073 |
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| COG category | [J] Translation, ribosomal structure and biogenesis |
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| COG ID | [COG0013] Alanyl-tRNA synthetase |
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| TIGRFAM ID | [TIGR00344] alanine--tRNA ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.224866 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGGCGCGA TAAACCGCTT TGGACTGTTC CAATCACATC TAGAGAGCCG CGTTGACATG
CCCAGCTTGA ACGACATCCG GTCGACCTTT CTGAACTACT TTGCAAAGCA GGGCCATGAG
GTCGTGGATT CCAGCCCGTT GGTTCCGCGC AATGACCCGA CGCTCATGTT CACCAACTCC
GGCATGGTGC AATTCAAAAA TTGCTTCACC GGTGTGGACC GGCGTGACTA TGTCCGCGCC
ACCACGGCGC AAAAATGTGT GCGTGCTGGC GGCAAGCACA ATGACCTCGA CAATGTCGGC
TATACTGCCC GCCATCACAC GTTTTTCGAG ATGCTCGGCA ACTTCTCCTT TGGGGATTAT
TTCAAAAACG AGGCGATCCC CTTTGCTTGG GAGCTGATCA CCGGCGAGTT TGATATTCCC
AAGGATAAAC TCTACACGAC CGTCTATCAC ACAGACGACG AAGCCTTTGA AATCTGGAAG
AAAGTAGGCG TCCCGGAGGA GCGGATCATT CGGATTGCGA CCTCTGACAA CTTCTGGCAG
ATGGGCGACA CGGGCCCCTG TGGTCCCTGC ACCGAGATTT TCTATGACCA CGGCGATCAC
ATCTGGGGTG GCCCTCCGGG CTCGCCCGAG GAAGATGGCG ACCGGTTCAT CGAAATCTGG
AACCTTGTTT TTATGCAGAA CGAGCGCTTT GCGGATGGGT CCATGGTGGA CCTCGACATG
CAGTCGATCG ACACCGGCAT GGGGCTGGAG CGGATTGCGG CTCTCTTGCA GGGCACCCAT
GACAACTATG AGACCGATCT TTTCAAATAT CTCATCGAGG CCTCGGCCAC GGTGACCAAG
AGCGAGCCCT ATGGTGACCA GAACGTGCAT CACCGCGTCA TCGCCGACCA CTTGCGGTCC
TGTTCCTTCC TGATTGCCGA AGGTGTGCTG CCCTCCAACG AGGGACGGGG CTATGTGCTC
CGCCGCATCA TGCGTCGCGC GATGCGCCAT GCCTCTCTCT TGGGGGCAAC CGATCCGGTG
ATGCACAAGC TGGTGCCCGC GCTCGTGAGC CAGATGGGAG CGGCCTATCC GGAACTGGGG
CAGGGGCAGG CGCTCATTGA AGAGACCTTC GAGCAGGAAG AAACCCGTTT TCTCAAGACC
TTGGATCGCG GCCTTAAGCT CCTGGACGAT GCGTCCGGTG ATCTAGAAAA AGGCGATGTC
CTGCCGGGCG AGACGGCCTT CAAGCTCTAT GATACCTTCG GTTTCCCGCT CGACCTCACT
CAGGATGCGC TGCGCGCGAA GGGCATCGAG GTGGACACCG ACGGCTTTGA CGCCGCGATG
AAAGCCCAGA AAGAGCAGTC GCGCGCCGGC GGCATTGGTC TGGGCGATGC GACCGATGTC
AAAGTCTACT TTGATATCGT CGACGCCGAG GGCACGACCG AATTCCTTGG CTATGAGACG
GAAAAAGCCG AGGGGCAGAT CGTGGCGCTG GTCAAGGACG GCGCCAGGGT CGACAGTGCC
AAAGCGGGCG AGAGCGTTCA GATCATCCTG AACCAGACAC CTTTTTATGG CGAGAGCGGT
GGCCAGGTTG GCGACAGCGG TATGCTCACG GTTGAGGGCG GCGCTGCGCG GATCACCGAC
ACCAAGAAGG TCGAAGGCCT GTTCCTTCAC ATCGCAGAAG TCACCGAGGG CGAGATCGCT
GTCGGCAGCG GTGCAGCGAT GGAAGTCGAC CACGTCCGCC GCAGCCAGAT CCGGGCGAAC
CACTCTGCCA CCCACCTGCT GCACGAGGCG CTGCGCAATG CGCTTGGCGA TCACGTTGCC
CAGAAAGGCT CGCTCAACGC CGCAGATCGT CTGCGCTTTG ACTTTAGTCA CAACAAGGCG
GTAAGCGCAG AGGACTTGTC GAAGATCTCC GCAGAAGTGA ATGATTTCAT TCGCCAAAAC
TCGGCCGTCA GCACCCGCAT CATGACGCCC GATGATGCCC GCGCCCTGGG CGCTCAGGCG
CTCTTTGGTG AGAAATACGG CGAAGAGGTT CGCGTTGTCT CCATGGGGCG CGCACCGACT
GGCAAGGGTG CGGATGGCGA AACCTACTCC ATCGAACTCT GCGGCGGCAC CCATGTGAAA
CAGACTGGTG ACATTGGCAC CTTTGTGATC TTGGGTGACA GCGCATCCTC GGCTGGCGTG
CGCCGGATCG AGGCGCTCAC GGGCGCGGCC GCTTTTGCGC ATCTGGAACG CGAAGCCGGG
CGGATGGCGG AGGTTGCCGC CTCGCTCAAG GCACAGCCTG CGGATGTGAT GGAACGGCTG
AAGGCGCTTA TGGACGAGCG CAAGGCCCTG CAGAACGAGA TTGCGACCCT CAAGCAGCAG
ATCGCCATGG GCGGCGGCGC CGGTGGCGGT GCTGAAGCCA AAGAGATCGG CGGCAAGACC
TTTCTCGGTC AGGCGCTGCA GGGAGTCTCG GGCAAGGATC TGCGTGGGCT GATAGATGCG
CATAAGCAGA AAATCGGCTC TGGCGTGATC CTGCTGATTG CCGAGGATGA CGGCAAGGTC
GCCGTTGCTG CCGGGGTCAC CGATGATCTG ACCGGCGAAA TTTCTGCTGT GGATGTGCTC
AAGGCGGCTG TGCCAGCTGT GGGCGGCAAA GGGGGCGGTG GTCGTCCCGA CATGGCGCAG
GGCGGCGGTA AGGATTTCTC CGGCGCCGAC GAGGCCATCA AGGCTGCCGA AGCTCTTTTG
AAAGGATAA
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| Protein sequence | MGAINRFGLF QSHLESRVDM PSLNDIRSTF LNYFAKQGHE VVDSSPLVPR NDPTLMFTNS
GMVQFKNCFT GVDRRDYVRA TTAQKCVRAG GKHNDLDNVG YTARHHTFFE MLGNFSFGDY
FKNEAIPFAW ELITGEFDIP KDKLYTTVYH TDDEAFEIWK KVGVPEERII RIATSDNFWQ
MGDTGPCGPC TEIFYDHGDH IWGGPPGSPE EDGDRFIEIW NLVFMQNERF ADGSMVDLDM
QSIDTGMGLE RIAALLQGTH DNYETDLFKY LIEASATVTK SEPYGDQNVH HRVIADHLRS
CSFLIAEGVL PSNEGRGYVL RRIMRRAMRH ASLLGATDPV MHKLVPALVS QMGAAYPELG
QGQALIEETF EQEETRFLKT LDRGLKLLDD ASGDLEKGDV LPGETAFKLY DTFGFPLDLT
QDALRAKGIE VDTDGFDAAM KAQKEQSRAG GIGLGDATDV KVYFDIVDAE GTTEFLGYET
EKAEGQIVAL VKDGARVDSA KAGESVQIIL NQTPFYGESG GQVGDSGMLT VEGGAARITD
TKKVEGLFLH IAEVTEGEIA VGSGAAMEVD HVRRSQIRAN HSATHLLHEA LRNALGDHVA
QKGSLNAADR LRFDFSHNKA VSAEDLSKIS AEVNDFIRQN SAVSTRIMTP DDARALGAQA
LFGEKYGEEV RVVSMGRAPT GKGADGETYS IELCGGTHVK QTGDIGTFVI LGDSASSAGV
RRIEALTGAA AFAHLEREAG RMAEVAASLK AQPADVMERL KALMDERKAL QNEIATLKQQ
IAMGGGAGGG AEAKEIGGKT FLGQALQGVS GKDLRGLIDA HKQKIGSGVI LLIAEDDGKV
AVAAGVTDDL TGEISAVDVL KAAVPAVGGK GGGGRPDMAQ GGGKDFSGAD EAIKAAEALL
KG
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