Gene TM1040_1196 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1196 
Symbol 
ID4076331 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1286849 
End bp1287859 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content59% 
IMG OID638006502 
ProductAraC family transcriptional regulator 
Protein accessionYP_613191 
Protein GI99081037 
COG category[K] Transcription 
COG ID[COG2207] AraC-type DNA-binding domain-containing proteins 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones26 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones26 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAACCG TGACCAATGC TTTTGCGCGC GCCATGGCCC AAGCGGGCGG GATGACGCTG 
ACCGACGATG GAGAGCTGAT CTCTGGCGGT ACTGTGGTGC GCCGACTTCC CAAACCTGCT
GATGGCAAAC TCTCTGAGAC CGATTATTTC GATCTTCTGG ATTGGATCCG GTTCCAGCAA
AAGGACGAGA TGGCACTGCT TGCGGCCTAT GCCAAACTGA TCCGGGCGGA TGATATTGGT
GTGCTGGGCC TTGCGATGAA AACCGCGCCA ACCCTGCGGG CATCGCTCGA ACGTTTGGAA
CGGTATTGGC AGGTTGTCAC GGATACTGCG ATCTATCGAC TGGACACCTC CCAAGATCCG
GCGCTCTTGA TCTTTGAGGC GCGCACGGGG CATCATCCTG TGCTGGATTT TCGCAACGAG
GGCGCCTTTG CCGGATTGGC ACGGAATATG CGTCTGTTTG TCGAGGGGGA TCTGGTTCTG
GACTATGTCA CCTTCAGACA TGCCTGCCGC AGCGATCCAG AGCAGTACCA GGCGCATTTT
GGCTGTTCCG TCCGCTTTGA TGCGGAGCAA AACGTCATCG CGCTGCGCAA AGAGATGCTT
GATCTGCCAA ACCGGTTGGG CGATGCGGCG GTTTCGGACT TTCTGACCAC GCACTTAGAG
ACCGAGATAG GCACGCTACA GGATGAAACC TCGGTACGTG CGGGGCTTTT GCGACTGTTG
ACGCCTGCGC TCAGTAACGG GGTGCCGCAG GCCGCAGATG TGGCCCGCGA GATGGGCATG
AGCGAGCGCA CGCTCTACCG GCGCCTTGCG GACGAGGGGC TTACGTTTCG CGACGTGCTG
ACCGAAGCTC AGTCGTCTCT GGCGCAGGAG CTTTTGAAAG ACAGCCGCAG CTCGATCGCG
GAGATCGCCT TTTTGACCGG GTTTTCGGAG CAGAGCACCT TTAGCCGTGC CTTCAAGCGC
TGGGTCGGGC AAGCGCCAGC GCAGTTTCGA CAGCAGTTCC CATCGCCCTG A
 
Protein sequence
MPTVTNAFAR AMAQAGGMTL TDDGELISGG TVVRRLPKPA DGKLSETDYF DLLDWIRFQQ 
KDEMALLAAY AKLIRADDIG VLGLAMKTAP TLRASLERLE RYWQVVTDTA IYRLDTSQDP
ALLIFEARTG HHPVLDFRNE GAFAGLARNM RLFVEGDLVL DYVTFRHACR SDPEQYQAHF
GCSVRFDAEQ NVIALRKEML DLPNRLGDAA VSDFLTTHLE TEIGTLQDET SVRAGLLRLL
TPALSNGVPQ AADVAREMGM SERTLYRRLA DEGLTFRDVL TEAQSSLAQE LLKDSRSSIA
EIAFLTGFSE QSTFSRAFKR WVGQAPAQFR QQFPSP