| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1177 |
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| Symbol | |
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| ID | 4077786 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1266814 |
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| End bp | 1269228 |
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| Gene Length | 2415 bp |
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| Protein Length | 804 aa |
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| Translation table | 11 |
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| GC content | 65% |
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| IMG OID | 638006483 |
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| Product | hypothetical protein |
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| Protein accession | YP_613172 |
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| Protein GI | 99081018 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0577] ABC-type antimicrobial peptide transport system, permease component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 5 |
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| Plasmid unclonability p-value | 0.00247698 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.649292 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGGCAGA CGCTCTATTG CTTCCTGAGC CATTGGCGCC GGGCGCCGTT GCAGCTCTTT
TTGCTGGTTG CCGGTCTGGC ACTTGCAACG GCGTTGTGGT CCGCAGTTCA AGCGATCAAC
GCTGAGGCCC GCGCCTCCTA TGCCCGCGCG GTTGAGCAAC TTGGCAACAC TGAGCTTCAG
GCCCTCGCAG CACCGGACAA TGACCCGATC CCGCTTCAGA CCTATGTCTC GCTGCGGCGC
GCGGGGTGGC AGCTTTCACC GATCCTTGAG GGCACTTGGC AGGCAGCGGG CAGCCCGATT
ACGGTTCTGG GCGTGGATGC GCTCAGCTAC CCGGGCACGG CTGCGATGCT GGACGCCGCC
TCAGAGGCCG GGTTCGATCT TCCTGCGCTC CTGACCCCGC CGGGCGTGGT CTATGCCCAT
CCCGACACCC TGCCCGCGCT CGCCGAGTTT GAGAACAGGG TTCCGTTGCC ACAACTGCCG
CCGCGCGTGG TGCTGATGGA TCTTTCTCTT GCCGGGGAAC TGCTGGGCCA GGAGAATTCG
CTCTCGCGCC TGTTGATCCT GCCGGATCAG CCATCCGGGC TCACCGCGCT TGCCGCTCTT
GCCCCAGAGC TGGAGGTCTC GCAAAACGCC GATGGTGCGC TGGCCGATCC TGCGCGCCTG
ACCCGCAGTT TTCACCTCAA CCTGACCGCC TTTGGATTTC TCGCCTTCTG CGTCGGGCTC
TTTATCGTAC AGGGGAGCGT GACACTCGGG ATCGAGCAGC GCCGCGGTAC CATTACCACT
CTGCGCTGCC TCGGAGTGTC CACCCGCGCG CTTCTGCGGG CGCTCTGCCT GGAACTTTTG
ATCCTTGCAG TCGTAGCCGG AACATTAGGG TTGGTCATCG GCTATCTGCT GGCGGCGATG
CTGCTGCCGG ACGTCAGCGC CACGCTGCGC GGGCTTTATG GCGCGCCTGT TGATGGCAGT
CTTACGCTGC GCCCGCTCTG GGTGCTCTCA GGGCTGACGA TGACGGCCGT AGGCACTGCG
GCGGCAGGGC TGCAGGCTTT TTTGGCGCTG CACCGTATGG CGAGCACGCT CTCACGCCCG
GCGGTTTCCG CCTCTCGCAT CACCGCGCGG GGCATTGCGC TCTTCTGCGG CGCTGCAATC
GGTTTGATCG CAGCCGGCGC ACTCGCACTC TGGGGCCTGC CGGGGCTCTG GGGCGGCTTT
GGCTTTCTGG GGGGCACTCT GCTCGGGAGC GCGCTTTTGG TGCCGCCGCT CCTCTGGGGG
GCAACCGGCC TTTTCCTCAA ACCGCTCAAG AGCCCGGTCT GGCGCTGGAT GGTGGCAGAC
AGCCGCTTGC AACTGGTGGG GCTTTCGTTG CCCTTGATGG CTCTCCTTTT GGCGATTGCG
ACCAACATCG GTGTCGGCAC CATGGTTTCG AGCTTCCGGC TCACCTTTCT GGACTGGATC
GAGCAGCGCG TGCCCGCCGA TGCCTATCTG GAGGTCACAT CCCCCCTCGC GGCTGAAGAG
GTCGCGACAT GGGCCGAGAG CCTTGGCGCC CGCACCCTGC CGCAGTATCG CAGCGACAGC
CGCACCGCCT CGGCGCCGCT GCGCATCTAT GGCATCGTCG ATGATCCGAT CTACCGCAGC
AAGTGGCCGC TTCTGAGCGC AGACCCAGAG GTCTGGACAC AGCTCTACAG TGCGGGCGCG
GTGCTGGTCA GCGAACAGCT TGCGCATCGC GAAGGTCTGG CGCTGGGCGA TCGGCTGCGC
CTTGCCCCGG ACTGGTCGCC GACGGTGGCC GGGATCTATC CAGATTACGG CAACCCGGAC
GGTCAGGCGG TGGTGGCGCT CTCCACGCTG CGCGCCAAGC GCAGTGACCT CGCCGTATCG
CGGGTCGGGC TGATCGCGCC AGAAGGCCTC TCGACCGCAG AGCTGATGCA ACGCGCGCGG
GGCGACCTCA ATCTTGGCAC CGATGAGATT GTCGAGGGCG CGGCGATCCG GCAGCTCTCG
GTTGGGATCT TTGACCGTAC CTTTGTGGTG ACGGGCGCGC TCAACATCCT GACACTGGGG
GTGGCGGGGT TTGCGCTTTT GACCAGCTTT CTCAGCCAGT GGCACAAACG TCTTCCCCAT
CTGGCCCCGA TCTGGGCGAT GGGTGTGACG CGGCCCGCGC TTGCAGGGCT TGAGCTATGC
CGCAGCCTCG CCTTTGCGCT TGCCACATTC ATGCTGTCGC TGCCGCTGGG ATTGTTTCTG
GCCTGGGCCT TGCTGAAGGT CATCAACCTC GAAGCCTTTG GCTGGCGCCT GCCAATGTAT
CTTTTTCCTG CCGATTGGGG GCGATTGCTG GTGCTGACGC TTGCGGTTGC AGCGCTTGCG
AGCCTCTTGC CAGCCTTGCG TCTCGCGCGG CTCGCCCCTG CCACCCTGCT TGGAGTATTT
GCAAGTGATC GCTAG
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| Protein sequence | MRQTLYCFLS HWRRAPLQLF LLVAGLALAT ALWSAVQAIN AEARASYARA VEQLGNTELQ
ALAAPDNDPI PLQTYVSLRR AGWQLSPILE GTWQAAGSPI TVLGVDALSY PGTAAMLDAA
SEAGFDLPAL LTPPGVVYAH PDTLPALAEF ENRVPLPQLP PRVVLMDLSL AGELLGQENS
LSRLLILPDQ PSGLTALAAL APELEVSQNA DGALADPARL TRSFHLNLTA FGFLAFCVGL
FIVQGSVTLG IEQRRGTITT LRCLGVSTRA LLRALCLELL ILAVVAGTLG LVIGYLLAAM
LLPDVSATLR GLYGAPVDGS LTLRPLWVLS GLTMTAVGTA AAGLQAFLAL HRMASTLSRP
AVSASRITAR GIALFCGAAI GLIAAGALAL WGLPGLWGGF GFLGGTLLGS ALLVPPLLWG
ATGLFLKPLK SPVWRWMVAD SRLQLVGLSL PLMALLLAIA TNIGVGTMVS SFRLTFLDWI
EQRVPADAYL EVTSPLAAEE VATWAESLGA RTLPQYRSDS RTASAPLRIY GIVDDPIYRS
KWPLLSADPE VWTQLYSAGA VLVSEQLAHR EGLALGDRLR LAPDWSPTVA GIYPDYGNPD
GQAVVALSTL RAKRSDLAVS RVGLIAPEGL STAELMQRAR GDLNLGTDEI VEGAAIRQLS
VGIFDRTFVV TGALNILTLG VAGFALLTSF LSQWHKRLPH LAPIWAMGVT RPALAGLELC
RSLAFALATF MLSLPLGLFL AWALLKVINL EAFGWRLPMY LFPADWGRLL VLTLAVAALA
SLLPALRLAR LAPATLLGVF ASDR
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