Gene TM1040_1170 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1170 
Symbol 
ID4075956 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1259585 
End bp1261216 
Gene Length1632 bp 
Protein Length543 aa 
Translation table11 
GC content60% 
IMG OID638006476 
Productacyl-CoA synthetase 
Protein accessionYP_613165 
Protein GI99081011 
COG category[I] Lipid transport and metabolism
[Q] Secondary metabolites biosynthesis, transport and catabolism 
COG ID[COG0318] Acyl-CoA synthetases (AMP-forming)/AMP-acid ligases II 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0279011 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGCGCCA ACCCCTACAA TACCGATCTG GATCGCACCC CGGCCAACTA TCAGCCCCTG 
ACCCCGCTCA TGTTTCTGGA GCGGGCCGCA ACGGTATTTC CAGAGCACAC GGCAATCATT
CACGGCCCCC TTCGACGCAG CTACGCCGCT TTTTATGCAC GCGCGCGCCA GCTTGGCTCG
GCACTGTCGC ATAGGGGCAT CACGCGGGGC GATACGGTCT CGGCCCTGCT GCCAAACACG
TCCGCGATGC TTGAGTGTCA CTATGGCGTC CCCATGTGCG GTGCGGTGCT GCATTCGATC
AACACCCGGC TTGATGCTGC GATCATCGCC TTTCAGCTGG ATCACGCGAT GTCCAAGGTC
GTCATCGTCG ACTCTGAATT CATGCCCTTG ATGCAGGAGG CGCTGGCGCT TTGCTCGGTG
CAGCCCCTGC TGATCGAGGT CGACGATCCC GTCTACGAGG GCGCGCGGAT CAAAACCGAA
GCCGTGGACT ACGATAGCTT TATTGCGGAT GGTGACGCCG AGTTTGCCTG GCTCATGCCC
GAAGACGAAT GGGACGCGAT CTCGATCAAC TACACCTCGG GCACCACCGG AGACCCCAAG
GGGGTCGTTT CGCATCATCG CGGGGCCTAT CTTTTGGCGC AGGGCAATGC GCTCACGACA
ACGATGGGCA AACATGCGGT CTATCTCTGG ACCCTGCCGA TGTTTCACTG CAACGGCTGG
TGTTTTCCCT GGACGCTCTC GGCGATCATT GGCACCCATG TCTGCCTGCG CCAGGTGCGG
GCGGATCAGA TCTGGAACGC GCTCGCCGAC GAGGGCGTCA CGCATCTCTG TGGCGCGCCC
ATCGTGATGT CGCTGATGAT CTCGGCCCCC GCCGACGTGC AGCGCCCCCT CGATCAGACC
GTTCAGTTTT TTACAGCCGC TGCCCCGCCG CCGGAAAAGC TGCTGGCGGA CATGAAAACC
GCAGGCTTTG AAGTCACGCA TCTTTATGGA CTCACAGAAA CCTATGGCCC TGCCGTGGTC
AACGACTGGC ATCAAAGCTG GTCCGAGCTG CCGCACGACG AACAGTCCCG CCTGAAATCC
CGGCAGGGCG TGCGCTATCT TCCGCTCGAG GGACTCAACG TTCTGGACCC CGAAACCCTA
GAGCCCGTGC CCCATGATGG CGAAACCATG GGCGAGGTCA TGTTTCGCGG CAATGTCGTG
ATGAAGGGCT ATTTTCGCAA TCCTGACGCC ACCCGAAAAG CCTTTGAGGG GGGCTGGTTT
CATTCCGGCG ATCTGGGTGT TGTTCATCCT GACGGCTATA TCCAGCTCAA GGACCGCTCG
AAGGATGTCA TTATTTCCGG CGGAGAGAAT ATCTCCTCCA TCGAGGTCGA AGAGGCGCTG
TATCGCCATC CCGCGATTGC CGTCACCGCC GTTGTCGCCA TGCCCGACGA GAAATGGGGC
GAAACACCAT GCGCCTTCAT CGAGCTGGCC GAAGGTGCAG AGATCGACAC CGATGCGCTC
AGGCAATGGT GTCGTGACCA ACTCGCCCCC TACAAGGTGC CGCGCAAATT TGTCCTGACC
GAAATCCCGC GCACCTCAAC CGGGAAAATC CAGAAATTCG CCCTGCGGGA ACAGGCGAAG
TCGCTCTGCT GA
 
Protein sequence
MSANPYNTDL DRTPANYQPL TPLMFLERAA TVFPEHTAII HGPLRRSYAA FYARARQLGS 
ALSHRGITRG DTVSALLPNT SAMLECHYGV PMCGAVLHSI NTRLDAAIIA FQLDHAMSKV
VIVDSEFMPL MQEALALCSV QPLLIEVDDP VYEGARIKTE AVDYDSFIAD GDAEFAWLMP
EDEWDAISIN YTSGTTGDPK GVVSHHRGAY LLAQGNALTT TMGKHAVYLW TLPMFHCNGW
CFPWTLSAII GTHVCLRQVR ADQIWNALAD EGVTHLCGAP IVMSLMISAP ADVQRPLDQT
VQFFTAAAPP PEKLLADMKT AGFEVTHLYG LTETYGPAVV NDWHQSWSEL PHDEQSRLKS
RQGVRYLPLE GLNVLDPETL EPVPHDGETM GEVMFRGNVV MKGYFRNPDA TRKAFEGGWF
HSGDLGVVHP DGYIQLKDRS KDVIISGGEN ISSIEVEEAL YRHPAIAVTA VVAMPDEKWG
ETPCAFIELA EGAEIDTDAL RQWCRDQLAP YKVPRKFVLT EIPRTSTGKI QKFALREQAK
SLC