| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1169 |
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| Symbol | |
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| ID | 4075955 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1257343 |
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| End bp | 1259133 |
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| Gene Length | 1791 bp |
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| Protein Length | 596 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638006475 |
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| Product | diguanylate cyclase with GAF sensor |
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| Protein accession | YP_613164 |
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| Protein GI | 99081010 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 26 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 7 |
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| Fosmid unclonability p-value | 0.0126253 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCA ATACGATCAC GAATTGGGCC TACGGATTGA CTGTTCTTCT GACCGCGTTG
TCGGGCGCCG CGTTCATCGC GTCGATCAAC AGCTCGGCCG AAGAACGCAT GGCGGTTGAA
ACACATCTAA TCCTGAACGA GTTGGGCGAA GAGCTTGCGA TCGGAGCGGA GCTGCGCACC
GACGAGGCAC GGCTTTATGT GATGCGCGGC GACCCGGATC ATCTTGAGGC TTTTGAGCGG
ACCGATCAGG CCGAAATGGC GCTGGAAGAG TCCGCCCGCG ACGGCACGCG TCTTGGCACC
ACCCCGGAAG AGACCGCATT TCTGAATCGG ATCATCGCGG ATATAGATGC GCTGCAAGAG
ATGGAGCGTG CGGCAATCAA AGCTTATCAA GCGGGCAACA TTGACCGCGC GCGGGGGCTC
TTGTTCGGGG GCGCGCATTA CCAGGCCCAC CTCAAACTCA TTGACGATGT AGTCCAGTTC
CGCCGGATGG TGCAAAGCCG GACAGACCGT GAGCTCGACA CCGCACATCA ACGCAGCGAC
TGGTTCGAAT TCGTTGCGCA GATCTCCCTC GCGCTCACCG CCACCGTTTT CCTCGGCGTA
CTCTATTTTG TCCTGCGTCG CCGGGTGGCG GTGCCCCTGG CACGCATGGC CGGCATCGTA
AAGCGCCTCG CCAGCCAGGA CTACGAGGTC GAGGTGCCAT TGGATCGCAG ACGGGACGAG
ATTGGTGAGC TCAATCGCGC CGTGCATGTG TTCCGCGAAA ACGGGCTCGA GCGGGAACGT
CTCGACGCCG AGCGCCGCCG TGACATCAAG ATCAAGGATC TGATCCTGAA GCTCATGCAC
CGGGTTCAGG CCTGCCAGTC TCTCGACGAA CTGGGGGATG TCCTTGCGCG GTATGCGCCG
CAGATCTTTC CCGACCTCTC CGGCACGCTC TACCTGCGCG CTGACGGTCA CGAGACCTTG
AACTGTGTGT CCCGATGGCA GACGTCATTC GACGACCCGC TCGAGATCAT CTGCGAGGCC
TGCTGGGCCC TGCGCCGCGG ACGCGCTCAT TATAGCGCCT TGGAATCAAA AGAAGATGTG
ATTTGCAACC ATCTCGCTGA CCCGAACGTT TCGACCCTGT GCATTCCGCT CGCTGCTCAG
GGCGAGACCA TCGGCCTTCT GAGTTTCTCT GGCGCCGAGA CCTCGACAGA GGTTGCGCGC
GAAGATCGGG TCTATCTGGA GCTTATTGCT GAAAACGTCG CGCTTGCGGC CGTGAACCTC
AATCTGCGCA CCCGGCTCTC GCAGCTGGTC GAACATGATC CTCTGACCGG GCTTTTGAAC
CGGCGCTCGC TGGATGTGGC CTTTGGCGAT TTTGTGCAAA ACCCGCCAAC CCTTCCGACC
GCCTGCCTGA TGATCGACAT TGATCACTTC AAGCGGATCA ATGATGAGTT TGGCCATGAG
GCCGGGGATA CGGTGATGCA AAGCTTTGCC GGGTTACTCC GCGAGGTCGT GGGCGACAGC
GGCTCCTGTT ACCGCTTTGG CGGCGAGGAA TTTGTGGTGA TCCTGCCGGA TCACGACGTC
GATGCCGCGC ATGAGATCGC CGAAGGCATT CGCACCCGCA CCGCAAAGAT GGCCATTGCC
CATCGCGGGC AATCTCTTGG GAAGGTCACG ATTTCCATCG GTCTTGCGGT TGCAGCATCC
GCAGGCACCC TCGACACCTT GTTGAGCCGC GCGGATTCAG CGCTGCTGCA GGCCAAGGTG
ACGGGTCGCA ACATCACGTT GCACGAGACA CTTGAGCTCG CCCCTTCCTG A
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| Protein sequence | MKINTITNWA YGLTVLLTAL SGAAFIASIN SSAEERMAVE THLILNELGE ELAIGAELRT
DEARLYVMRG DPDHLEAFER TDQAEMALEE SARDGTRLGT TPEETAFLNR IIADIDALQE
MERAAIKAYQ AGNIDRARGL LFGGAHYQAH LKLIDDVVQF RRMVQSRTDR ELDTAHQRSD
WFEFVAQISL ALTATVFLGV LYFVLRRRVA VPLARMAGIV KRLASQDYEV EVPLDRRRDE
IGELNRAVHV FRENGLERER LDAERRRDIK IKDLILKLMH RVQACQSLDE LGDVLARYAP
QIFPDLSGTL YLRADGHETL NCVSRWQTSF DDPLEIICEA CWALRRGRAH YSALESKEDV
ICNHLADPNV STLCIPLAAQ GETIGLLSFS GAETSTEVAR EDRVYLELIA ENVALAAVNL
NLRTRLSQLV EHDPLTGLLN RRSLDVAFGD FVQNPPTLPT ACLMIDIDHF KRINDEFGHE
AGDTVMQSFA GLLREVVGDS GSCYRFGGEE FVVILPDHDV DAAHEIAEGI RTRTAKMAIA
HRGQSLGKVT ISIGLAVAAS AGTLDTLLSR ADSALLQAKV TGRNITLHET LELAPS
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