| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1151 |
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| Symbol | |
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| ID | 4078447 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1238449 |
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| End bp | 1242102 |
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| Gene Length | 3654 bp |
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| Protein Length | 1217 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638006456 |
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| Product | ribonucleotide-diphosphate reductase subunit alpha |
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| Protein accession | YP_613146 |
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| Protein GI | 99080992 |
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| COG category | [F] Nucleotide transport and metabolism |
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| COG ID | [COG0209] Ribonucleotide reductase, alpha subunit |
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| TIGRFAM ID | [TIGR01435] glutamate--cysteine ligase/gamma-glutamylcysteine synthetase, Streptococcus agalactiae type
[TIGR02504] ribonucleoside-diphosphate reductase, adenosylcobalamin-dependent |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.0210759 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.34351 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAAATCG AGCGTCGTTT CACAGAAGCA GGGCAGGATG CCTATGCATC CTTGGATTTC
ATCGGGGCGA CGTCCGAGAT CCGAAACCCT GATGGCACCA TCGTGTTCCG GCTCGAAGGC
ATCGAGGTTC CATCGACCTG GAGCCAAGTG GCCAGCGACG TGATCGCGCA GAAGTACTTT
CGCAAGGCCG GTGTCCCGTC GCGCCTGAAG AAAGTCCGCG AGAAAGGCGT GCCGGAGTTC
CTGTGGCGTT CGGTTCCAGC TGATGACAAT GTGGAGCTCG GCGGCGAGAC CTCCTCCAAA
CAGGTGTTCG ACCGTCTGGC CGGGGCCTGG ACCTACTGGG GCTGGAAGGG GGGCTATTTC
TCCTCCGAGG AGGACGCGCG CGCCTATTTC GACGAGATGC GCTATATGCT GGCAACCCAG
CGCGCCGCGC CCAACAGCCC GCAGTGGTTC AACACTGGCC TGCACTGGGC CTATGGCATC
GACGGCCCGG CGCAGGGGCA TCACTATGTG GATTACAAGA CCGGAAAGCT GACCAAATCC
GACAGCGCCT ATGAGCACCC GCAACCGCAC GCCTGCTTTA TCCAGTCCGT GTCGGACGAT
CTGGTGCAGG ACGGTGGCAT CATGGATCTC TGGGTGCGTG AGGCGCGCTT GTTCAAATAC
GGCTCCGGCA CCGGCACCAA CTTCAGCCAT CTGCGGGCCG AGGGCGAGAA GCTCTCTGGT
GGGGGCAAAT CCTCTGGTCT CATGGGCTTT TTGAAAATCG GCGATCGTGC TGCTGGCGCG
ATCAAATCAG GCGGGACAAC CCGTCGAGCA GCGAAGATGG TGATCGTGGA TGCCGATCAC
CCGGATATCG AGCAATTCAT CGAATGGAAG GTGCTCGAAG AACAGAAAGT CGCCTCCATC
GTGGCCGGCT CCAAGATGCA CGAGAAGATG CTCAACGGTA TCTTTGAAGC GCTGCGGACG
TGGGACGGTC TCTCTGAGGA TGCCTATGAT CCGGCGGAAA ACCCGGCTCT GAAAAAAGCG
ATCCGCGAAG CCAAGAAGGT CGCCATCCCA GAGACTTATA TCAAACGCGT GCTGGATTAT
GCTCGTCAGG GCTATGACAG CATCGAGTTC CCGACCTATG ACACCGATTG GGACTCTGAG
GCCTATTCGT CGGTCTCGGG CCAGAACTCC AACAACTCCA TCCGCGTCAC CAATGCATTC
CTGCATGCGG TCGAAAAAGA CGCCGATTGG GAGCTGATCA ACCGCACCGA CGGCCAGGTC
GCCAAGACCG TGAAGGCGCG TGATCTCTGG GAGAAGGTCG GCCACGCAGC CTGGGCCTGC
GCCGATCCGG GCATCCAGTT CCACGACACT GTCAATGAAT GGCACACCTG CCCCGAAGAT
GGTGAGATCC GGGGCTCAAA CCCTTGTTCT GAATACATGT TCCTGGACGA CACCGCCTGT
AACCTGGCGT CGCTGAACCT CCTGACCTTC TATCAGGGCG GCGTGTTCCA GGCCGAAGAT
TTCATGCACG CCAGCCGTCT GTGGACGCTG ACGCTGGAAA TCTCGGTGAT GATGGCGCAG
TTCCCATCGA AGGAAATCGC GCAGCTGTCG TATGACTTCC GCACGCTGGG TCTGGGCTAT
GCCAACATCG GTGGCCTGCT GATGAACATG GGCTACGGCT ATGACAGCGA CGAAGGCCGC
GCGCTTTGCG GATCTTTGAC AGCGATCATG ACTGGTGTGG CCTATGCGAC CTCTGCCGAG
ATCGCCTCCG AGTTGGGGCC CTTTGCGGGC TATGAGCGCA ATGCCGACCA CATGCTGCGG
GTGATGCGCA ATCACCGCAA CGCGGCCTAT GGTGCGACCG AGGGATATGA CAAGCTCACC
GTGAAGCCGG TGCCGTTGGA TTTGCAGAAT TGCCCGGATG CGCGTCTCAC GGAACTCGCG
ATGAGCGCCT GGGACGAGGC GGTTCGCCTT GGCGAGGAAC ACGGCTATCG CAACGCCCAA
TCCACCGTGA TCGCGCCCAC CGGTACCATT GGTCTGGTGA TGGACTGCGA CACCACCGGG
ATCGAGCCGG ACTTTGCCCT CGTGAAGTTC AAAAAACTCG CAGGTGGCGG GTATTTCAAG
ATCATCAATC GCTCGGTGCC CTCGGCGCTC GAAGGGCTCG GCTATTCCTC CGCGCAGATC
GAAGAGATCG TCTCTTATGC GGTCGGTCAT GGCTCCATCG GGAACGCGCC GGGGATCAAC
CACACCTCGC TCACCGGCCA TGGTTTTGGC CCCAATGAGC TGGCAAAGGT GGACGCTGCA
CTTGAGAGTG CCTTTGACAT CCGGTTTGTG TTCAACCAGT GGACATTGGG CGAGGAGTTC
TGCACCGGCG TGTTGGGCAT TCCTGCCGAT AAGCTGAATG ATCCGGCCTT TGATCTGCTG
CGTCACCTTG GGTTCTCCAA GGCCGACATT GAGGCTGCCA ATGACCATGT CTGCGGCACC
ATGACGCTTG AAGGTGCGCC GCATCTCAAG GAAGAGCATT ATTCGATCTT CGATTGTGCC
AACCCCTGCG GCAAAAAAGG TAAGCGTTAT CTTGGGGTTG AGAGCCATAT CAAGATGATG
GCGGCCGCGC AGAGCTTTAT CTCCGGTGCG ATTTCCAAGA CCATCAACAT GCCCAACAAC
GCCACCATCG AGGACTGTCA GAAGGCCTAC GAGCTGAGCT GGTCCTTGGG TGTGAAGGCC
AATGCGCTCT ATCGTGACGG CTCCAAACTG AGCCAGCCGC TCGCGGCGGC GCTCGTTGAG
GATGATGACG AGGCGGCGGA GGTGCTCGAG AGCGGCTCGG TGCCGGAAAA AGCGGCTGTT
CTGGCCGAGA AGATCGTCGA GAAAGTGGTC ATCAAGGAGG TGATGAAATC TCATCGCACC
AAGATGCCGC AGCGCCGCAA GGGCTATACG CAAAAGGCGG TTGTCGGCGG CCACAAGGTC
TACTTGCGCA CGGGGGAATA TGAGGACGGC AACCTCGGCG AGATCTTCAT CGACATGCAC
AAGGAAGGCG CGGGCTTCCG GGCGATGATG AACAACTTTG CCATTGCGGT CTCGGTTGGT
CTGCAATACG GCGTGCCGCT CGAGGAATTT GTGGATGCCT TCACATTCAC GAAATTCGAA
CCTGCGGGCA TGGTTCAGGG CAACGACTCG ATCAAGAACG CGACCTCGAT CCTCGACTAT
GTGTTCCGCG AACTCGCCGT CAGCTACCTT GATCGGACGG ATCTGGCGCA TGTGAAGCCC
GAAGGCGCAA CCTTTGATGA TCTGGGCCGT GGCGAAGCAG AAGAGGGCGT GTCGAACCTC
TCTGAGCTGA GCGATGGGGC TGCGTCGAAA TCGCTCGAGG TGCTAAAGCA GATCTCCTCT
ACCGGCTATC TGCGCAAGCG TCTGCCGCAG GAACTGGTGG TGCTGCAAGG CGGCCAGACC
AGTGTAGCGG TGACCGCTCT GGATGGTAGC ACTGATCCGG TTGCAGCCCT GCAAAAACTG
GTACCTGAGA CCTCTGAGGC CCCGGCCGTG AGCAGCGCAA TGGATGCGCG CACCAAGGCC
CGGATGCAGG GCTATGAGGG GGATCCTTGC GGCGAATGCG GCAACTACAC GCTGGTGCGC
AACGGCACCT GCATGAAATG CAACACCTGC GGCTCCACCT CGGGCTGTAG CTAA
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| Protein sequence | MKIERRFTEA GQDAYASLDF IGATSEIRNP DGTIVFRLEG IEVPSTWSQV ASDVIAQKYF
RKAGVPSRLK KVREKGVPEF LWRSVPADDN VELGGETSSK QVFDRLAGAW TYWGWKGGYF
SSEEDARAYF DEMRYMLATQ RAAPNSPQWF NTGLHWAYGI DGPAQGHHYV DYKTGKLTKS
DSAYEHPQPH ACFIQSVSDD LVQDGGIMDL WVREARLFKY GSGTGTNFSH LRAEGEKLSG
GGKSSGLMGF LKIGDRAAGA IKSGGTTRRA AKMVIVDADH PDIEQFIEWK VLEEQKVASI
VAGSKMHEKM LNGIFEALRT WDGLSEDAYD PAENPALKKA IREAKKVAIP ETYIKRVLDY
ARQGYDSIEF PTYDTDWDSE AYSSVSGQNS NNSIRVTNAF LHAVEKDADW ELINRTDGQV
AKTVKARDLW EKVGHAAWAC ADPGIQFHDT VNEWHTCPED GEIRGSNPCS EYMFLDDTAC
NLASLNLLTF YQGGVFQAED FMHASRLWTL TLEISVMMAQ FPSKEIAQLS YDFRTLGLGY
ANIGGLLMNM GYGYDSDEGR ALCGSLTAIM TGVAYATSAE IASELGPFAG YERNADHMLR
VMRNHRNAAY GATEGYDKLT VKPVPLDLQN CPDARLTELA MSAWDEAVRL GEEHGYRNAQ
STVIAPTGTI GLVMDCDTTG IEPDFALVKF KKLAGGGYFK IINRSVPSAL EGLGYSSAQI
EEIVSYAVGH GSIGNAPGIN HTSLTGHGFG PNELAKVDAA LESAFDIRFV FNQWTLGEEF
CTGVLGIPAD KLNDPAFDLL RHLGFSKADI EAANDHVCGT MTLEGAPHLK EEHYSIFDCA
NPCGKKGKRY LGVESHIKMM AAAQSFISGA ISKTINMPNN ATIEDCQKAY ELSWSLGVKA
NALYRDGSKL SQPLAAALVE DDDEAAEVLE SGSVPEKAAV LAEKIVEKVV IKEVMKSHRT
KMPQRRKGYT QKAVVGGHKV YLRTGEYEDG NLGEIFIDMH KEGAGFRAMM NNFAIAVSVG
LQYGVPLEEF VDAFTFTKFE PAGMVQGNDS IKNATSILDY VFRELAVSYL DRTDLAHVKP
EGATFDDLGR GEAEEGVSNL SELSDGAASK SLEVLKQISS TGYLRKRLPQ ELVVLQGGQT
SVAVTALDGS TDPVAALQKL VPETSEAPAV SSAMDARTKA RMQGYEGDPC GECGNYTLVR
NGTCMKCNTC GSTSGCS
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