Gene TM1040_1148 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_1148 
Symbol 
ID4078444 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp1235783 
End bp1236388 
Gene Length606 bp 
Protein Length201 aa 
Translation table11 
GC content58% 
IMG OID638006452 
Productpyridoxamine 5'-phosphate oxidase 
Protein accessionYP_613143 
Protein GI99080989 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG0259] Pyridoxamine-phosphate oxidase 
TIGRFAM ID[TIGR00558] pyridoxamine-phosphate oxidase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value1.48678e-10 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones12 
Fosmid unclonability p-value0.197095 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGTCTGATC GTGAAGGACT CTTTGGCGGC GATGATCCGT TTGAGATCGC CCGCAAGTGG 
CTGGCAGAGG CCACCGAGAC CGAAATCAAC GACCCCAATG CCATTGCGCT TGCGACCGTG
GATGCCTCCG GCATGCCCAA CAGCCGCATG GTGTTGCTGA AGGAAATCGA AGACGCTGCC
TTTGTGTTCT ATACCAACTA TGAGAGCGCC AAGGCACAGG AGATCGAGGC CAGCGGCACC
GCGTCCTTTG TGATGCACTG GAAATCCCTG CGTCGCCAGA TCCGCGTGCG CGGACATGTC
ACCAAGGAAA ACGGACCGCA GGCGGATGAG TATTTTGCGT CCCGCTCGCT CAAGAGCCGT
CTTGGGGCCT GGGCCTCCAA GCAGTCGCAG CCGCTCGCCT CGCGCAGCGC CCTGATGGCA
GAGGTGGCCA AGATCACTGC CCAGAAAGGT CCAAATCCGA AGCGCCCGGA ATTCTGGGGC
GGCTACCGGA TCACACCGAT TGAAATTGAA TTTTGGGCGG ATGGGGCCTT TCGATTGCAC
GACCGTTTTG TGTGGCGAAA AAATACTTCA CATGATAATT GGACAATCAC GCGTCTTAGC
CCGTAA
 
Protein sequence
MSDREGLFGG DDPFEIARKW LAEATETEIN DPNAIALATV DASGMPNSRM VLLKEIEDAA 
FVFYTNYESA KAQEIEASGT ASFVMHWKSL RRQIRVRGHV TKENGPQADE YFASRSLKSR
LGAWASKQSQ PLASRSALMA EVAKITAQKG PNPKRPEFWG GYRITPIEIE FWADGAFRLH
DRFVWRKNTS HDNWTITRLS P