| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1104 |
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| Symbol | |
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| ID | 4077811 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1185278 |
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| End bp | 1187128 |
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| Gene Length | 1851 bp |
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| Protein Length | 616 aa |
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| Translation table | 11 |
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| GC content | 57% |
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| IMG OID | 638006408 |
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| Product | TPR repeat-containing protein |
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| Protein accession | YP_613099 |
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| Protein GI | 99080945 |
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| COG category | [O] Posttranslational modification, protein turnover, chaperones |
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| COG ID | [COG3914] Predicted O-linked N-acetylglucosamine transferase, SPINDLY family |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGTCGCAGC CCAATCAAAC CCCAAAACTC GCGGTGATGC AGCCCACCAA GAAGCAGTTC
CCCGAGTTCG AAAAATTCGC CAATTCCGTC AAGGCGCAGG AACGCGCGAA ATTCGCCTAT
GAAATGAAAA ACGGGCTGCG CAGCAGCCGG GCGAAAGGGG AGCAGACCAA GGACACTGTG
ACCAAGCTTC TGCGCAAGGC TCAGGCGCTC ATCCTGAAAC ATGAGAACGA AAAGGCCGAG
GCGGTGATCA ACCAGGCGAT TGCGCTCGAG GGACAGGATG CGCGGCTCCA TTCGCTGATG
GGCGAAGTGC TCATGAAGGA TTCCAACCGG ATGATGGACG CGCTGGGGAG CCTGATGCGA
GCCGTCAAGC TGGAGCCGAC CAACGGCAGC CACTACGGCA TGATCGGCAC CCTTCTGATG
CGCCTTCAGA AATTTGAAGA GGCGATCGAT TACTTTGAAA TTGCTGTGAA ATTCGATCCC
AAAAATCATA TCGCCCTGTC GCGGATGATG CATACCAAAG CCCATCGCGC GCGCTGGGAT
GATTTCAACA AGATCCCGAC CTACCTCAAG CAGTTCAAGA ACCAGAACGT GCTGTCCGAT
CCTTTTGCCT TCCTGTCGCT TTGCGATGAT GCGGCGTTTC AGAAACAGCG CTCCATCGCC
CAGATCAATT CCAAGTTCTG CAACCCCGTC AAAGCCCCCA TCTTCAAGGG GGAGCGCGCG
GCCGGCGAAA AGATCCGGAT CGGCTATTTC TCGAACGACT TCTACAACCA CGCCACCATG
CATCTCATGG GGGGGCTGCT GGAAAACCAC GACCGATCGA AGTTCGAGAT CTATATCTAC
GACTATGGCT CCAAGCTGCG GGACCACGAA CACGAGCGCG CGCGTCGCAG CGCCGATGTG
TTTCGCGATA TCCGCACTCT GAACACTGCG CAGATCGTTG ATCTGGCGCA TGGGGATGCT
CTGGATATTG CGGTGGATCT CAAGGGCTTT ACCGAGAATG GGCGGCTGGA CATGTTCAAC
AGTCGCGTGG CGCCTGTGCA GGTGGCCTAT CTGGGGTATC CGGGCACGAC CGGTTTGAAA
TCAATGGATT ACATGGTGGC CGACAAGATC ACGATCCCGT CGCACCTGCG CAAGCACTAT
ACCGAAAACA TCCTCTATAT GCCCAATTGC TACCAGCCCA ATGACGAGTC GCGCTTTATC
GCCGAGGTTG CAGACACGCG GGCCAGCCAT GATCTCCCCG AAGAGGGGTT TGTGTTCTCC
TCCTTCAACA ACCCCTACAA GGTCACGCCG CGCGAGTTCG GCATCTGGAT GGACCTCCTG
AAAGAAGTGC CCGACAGCGT GCTGTGGTTC TATGTCTCAA AGGCAGAGAT CATCGACCGT
CTGCGCAAGG AAGCCGAGTC GCGCGGTGTC GATGGTGCGC GCATCATCCC CACCGGGCGG
ATGCAGCCGG AGTACCACCT GGCGCGCCTG AAACACGCCG ATCTTTTCCT GGATACCTTC
AACGTCAACG CACACACGAC CGCCAGTGAT GCACTCTGGG CGGGCTTGCC CGTTGTCACC
AAAACCGGCG AGCAATTCGC CGCGCGGGTG GCGGGCAGCA TCCTCAGCGC AGCGGGGCTT
GAGGATCTGG TCACTCATAG CGAGAAGAAA TATTACGAAG TGGCTCTGCG CATTGCCCAA
GATCCTGACT ATCTTGCGGA TATTCGCAAG CGTCTGGCGG CGTCGCACGA GAACTCGCCG
CTGTTTGATA CCAAATCCTA CACCCGCGAT TTTGAACGTC TGATGGAGCG CGCGTTCCAG
AATTACATCG ACGGCAACGC CCCGCGCAGT CTCGGAATTT CCGCAGCCTG A
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| Protein sequence | MSQPNQTPKL AVMQPTKKQF PEFEKFANSV KAQERAKFAY EMKNGLRSSR AKGEQTKDTV
TKLLRKAQAL ILKHENEKAE AVINQAIALE GQDARLHSLM GEVLMKDSNR MMDALGSLMR
AVKLEPTNGS HYGMIGTLLM RLQKFEEAID YFEIAVKFDP KNHIALSRMM HTKAHRARWD
DFNKIPTYLK QFKNQNVLSD PFAFLSLCDD AAFQKQRSIA QINSKFCNPV KAPIFKGERA
AGEKIRIGYF SNDFYNHATM HLMGGLLENH DRSKFEIYIY DYGSKLRDHE HERARRSADV
FRDIRTLNTA QIVDLAHGDA LDIAVDLKGF TENGRLDMFN SRVAPVQVAY LGYPGTTGLK
SMDYMVADKI TIPSHLRKHY TENILYMPNC YQPNDESRFI AEVADTRASH DLPEEGFVFS
SFNNPYKVTP REFGIWMDLL KEVPDSVLWF YVSKAEIIDR LRKEAESRGV DGARIIPTGR
MQPEYHLARL KHADLFLDTF NVNAHTTASD ALWAGLPVVT KTGEQFAARV AGSILSAAGL
EDLVTHSEKK YYEVALRIAQ DPDYLADIRK RLAASHENSP LFDTKSYTRD FERLMERAFQ
NYIDGNAPRS LGISAA
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