| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1078 |
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| Symbol | |
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| ID | 4076311 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 1153751 |
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| End bp | 1155127 |
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| Gene Length | 1377 bp |
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| Protein Length | 458 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006382 |
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| Product | pyruvate dehydrogenase subunit beta |
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| Protein accession | YP_613073 |
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| Protein GI | 99080919 |
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| COG category | [C] Energy production and conversion |
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| COG ID | [COG0022] Pyruvate/2-oxoglutarate dehydrogenase complex, dehydrogenase (E1) component, eukaryotic type, beta subunit
[COG0508] Pyruvate/2-oxoglutarate dehydrogenase complex, dihydrolipoamide acyltransferase (E2) component, and related enzymes |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.00798693 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.879524 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCAACTG AAATTCTGAT GCCCGCCCTG TCGCCGACCA TGGAGGAAGG CACACTGGCC
AAATGGCTGG TCAAGGAAGG CGATACCGTG AATTCCGGCG ATATTCTAGC CGAGATCGAA
ACAGACAAGG CCACGATGGA ATTCGAGGCC GTCGACGAAG GTATCGTCGG CAAGATCCTC
ATCGACGAGG GCTCTGAGGG CGTAAAAGTG AACACGCCCA TCGCGATCCT TGTTGAAGAA
GGGGAAAGCG TCGAGGATGC GGTCTCCTCC GCAGCCGCGC CTGCAGCCGA AGCCCCCGCC
GCAGAGGCCG CAGCGCCCGC GCCGGTCGCC GCGGCTGCCG CCACCCCGGC CGCACCCGAG
GTGGATGAAA GCCCCGATTA TCCCGAAGGC ACCGAGATGG TCAGCCAGAC CGTCCGTGAA
GCCCTGCGCG ACGCCATGGC CGAAGAGATG CGCAGCAGCG AAGATGTCTT TGTGATGGGT
GAAGAAGTCG CCGAATATGA GGGCGCTTAC AAGATCACCC AAGGTCTTCT GGACGAATTC
GGCTCCAAAC GCGTGATCGA CACCCCGATC ACCGAACATG GCTTTGCCGG GATCGCCACC
GGCGCGGCCT TCGGGGGCCT GCGCCCGGTC GTGGAGTTCA TGACCTTCAA CTTCGCCATG
CAAGCGATTG ACCACATCAT CAACTCTGCC GCCAAGACGC TCTATATGTC CGGTGGTCAG
ATGGGCGCAC CGATGGTGTT CCGTGGCCCC AATGGCGCCG CCGCCCGCGT GGCTGCCCAG
CACTCTCAGG ACTATGCGGC CTGGTACATG CAGATCCCCG GCCTCAAAGT GGCGATGCCC
TACTCCGCTG CCGACGCCAA AGGCCTGCTG AAATCGGCGA TCCGCGACCC CAACCCGGTG
ATTTTCCTCG AGAATGAGAT CCTCTACGGC AAATCCTTTG AGGTGCCCAA GCTTGATGAC
TACACCGTGC CCTTCGGCAA GGCGAAGATC TGGCGCAAGG GCGATGATGT GACCATCGTG
TCCTTCGGCA TCGGCATGAC CTACGCGCTT GACGCGGCGG ACAAGCTGGC CGAGGACGGC
ATCAACGCCG AGGTCATCGA CCTGCGCACC CTGCGCCCGA TGGACCTGCC CACCGTCATC
AAATCGGTGA TGAAGACCAA CCGTCTGGTC ACTGTTGAGG AAGGCTGGCC GCAGGGCTCC
GTTGGCTCCT ACATCGCCTC CGAGGTGATG CAACAGGCGT TCGACTATCT CGATGCGCCC
GTCGCGGTCT GCACCGGCAA GGACGTGCCG ATGCCCTATG CTGCCAACCT CGAAAAACAC
GCGCTGATCA CCACCGACGA GGTGATCGAA GCCGTGAAGC AAGTGACCTA CCGCTAA
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| Protein sequence | MATEILMPAL SPTMEEGTLA KWLVKEGDTV NSGDILAEIE TDKATMEFEA VDEGIVGKIL
IDEGSEGVKV NTPIAILVEE GESVEDAVSS AAAPAAEAPA AEAAAPAPVA AAAATPAAPE
VDESPDYPEG TEMVSQTVRE ALRDAMAEEM RSSEDVFVMG EEVAEYEGAY KITQGLLDEF
GSKRVIDTPI TEHGFAGIAT GAAFGGLRPV VEFMTFNFAM QAIDHIINSA AKTLYMSGGQ
MGAPMVFRGP NGAAARVAAQ HSQDYAAWYM QIPGLKVAMP YSAADAKGLL KSAIRDPNPV
IFLENEILYG KSFEVPKLDD YTVPFGKAKI WRKGDDVTIV SFGIGMTYAL DAADKLAEDG
INAEVIDLRT LRPMDLPTVI KSVMKTNRLV TVEEGWPQGS VGSYIASEVM QQAFDYLDAP
VAVCTGKDVP MPYAANLEKH ALITTDEVIE AVKQVTYR
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