| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_1061 |
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| Symbol | |
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| ID | 4077201 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 1139733 |
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| End bp | 1140929 |
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| Gene Length | 1197 bp |
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| Protein Length | 398 aa |
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| Translation table | 11 |
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| GC content | 62% |
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| IMG OID | 638006365 |
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| Product | phage major capsid protein, HK97 |
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| Protein accession | YP_613056 |
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| Protein GI | 99080902 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG4653] Predicted phage phi-C31 gp36 major capsid-like protein |
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| TIGRFAM ID | [TIGR01554] phage major capsid protein, HK97 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 24 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.0887541 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACAGACC ATCCCTTCAC GGGCCACGCG CCCGAGGATG CGGCGACCCC GCCGCAGAAT
GTGGCCACGG AAGTGAAACA GGCTGTTTCG CAATTCGTGC AGCATTTCAA GGGGTTCCAA
GACGACGTGA CCCAAAAACT CAAACAGACG GAAGAGCGTA TGACCATGTT GGATCGTAAA
ACCCAAACCG CGGCGCGGCC GCATCTCGCA GCGGCCGAGG TCGATGGCGC ACCGCATCAA
AAGGCGATGC AAGCCTATCT GCGCCAGGGC GACGAGGAGG GCTTTCGCGG CCTCGACCTG
GAGGGCAAGG CCATGTCCAC GGCGGTGAAT TCCGATGGCG GTTTCCTGGT CGATCCGCAG
ACGGCGGATG TGGTGAGATC GGTGCTGCAC TCCACTGCGT CGATCCGTGC GGTGGCCTCG
GTGGTCAATG TGGAGGCGAC CTCCTTTGAC GTGCTGATCG ACCATTCCGA CGTGGGCGCG
GGCTGGGCCA CCGAGACCGG CTCGGTTACA GAGACCGGCA CGCCGTCCAT TGACCGTATC
GTGATCCCGC TGCACGAGCT CTCGGCCTTG CCCAAGGCTT CGCAACGGCT GCTGGATGAC
AGTGCCTTTG ACATCGAGGG CTGGCTTGCG GGCCGGATCG CCGACAAATT CGCCCGTGCC
GAAGCGCAGA GTTTTATCTC GGGGGATGGC GTGGACAAAC CCACCGGCAT CCTGACCCAC
CCCACGGTGG ACAATGGCAG CTGGAGCTGG GGGAACATCG GCTATGTGGC CACCGGCAGC
GATGGCGGCA TAGGCTCGGC AGATGCGATC GTGGATCTGG TCTATGCGCT GGATGCGCGC
TACCGCGCTG GGGCGAGCTT TGTGATGAAC TCCAAAACGG CGGGTCTTAT CCGCAAACTC
AAGGACGCCG ATGGTCGTTT CCTGTGGTCC GACGGTCTTC AGGCGGGCGA ACCTGCGCGG
CTGATGGGCT ATCCGGTGCT GGTGGCCGAG GATATGCCGG ATGTGGCCTC GGATAGTCTC
TCGATTGCCT TTGGGGATTT TGCCGCGGGC TACACGATCG CCGAGCGTCC CGATCTGCGC
GTTCTGCGCG ATCCCTTCTC TGCAAAACCG CATGTGCTGT TTTATGCCTC CAAGCGCGTG
GGCGGCGACG TGAGCGATTT TGCCGCGATC AAGCTGATGA AATTCGGGCT GAGCTGA
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| Protein sequence | MTDHPFTGHA PEDAATPPQN VATEVKQAVS QFVQHFKGFQ DDVTQKLKQT EERMTMLDRK
TQTAARPHLA AAEVDGAPHQ KAMQAYLRQG DEEGFRGLDL EGKAMSTAVN SDGGFLVDPQ
TADVVRSVLH STASIRAVAS VVNVEATSFD VLIDHSDVGA GWATETGSVT ETGTPSIDRI
VIPLHELSAL PKASQRLLDD SAFDIEGWLA GRIADKFARA EAQSFISGDG VDKPTGILTH
PTVDNGSWSW GNIGYVATGS DGGIGSADAI VDLVYALDAR YRAGASFVMN SKTAGLIRKL
KDADGRFLWS DGLQAGEPAR LMGYPVLVAE DMPDVASDSL SIAFGDFAAG YTIAERPDLR
VLRDPFSAKP HVLFYASKRV GGDVSDFAAI KLMKFGLS
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