| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0895 |
|---|
| Symbol | |
|---|
| ID | 4075992 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 956048 |
|---|
| End bp | 956524 |
|---|
| Gene Length | 477 bp |
|---|
| Protein Length | 158 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 58% |
|---|
| IMG OID | 638006197 |
|---|
| Product | TraR/DksA family transcriptional regulator |
|---|
| Protein accession | YP_612890 |
|---|
| Protein GI | 99080736 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG1734] DnaK suppressor protein |
|---|
| TIGRFAM ID | [TIGR02420] RNA polymerase-binding protein DksA |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 29 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 19 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTTGGAA AATTTGAAGA GACCAAGATG ATGGGCCAGA CCGAAGGAGC CGAAATGAAG
CAGGACGTGT TTCTGCCGGA GGACTATCGC CCGGCCGAAG ACGAGCCGTT TATGAATGAA
CGGCAAATGG AGTATTTTCG ACGCAAGTTG TTGAATTGGA AAGCCGAGCT TTTGGATGAA
AGCCGGGATA CCATCGAGGG CCTGCAGGAA AATACGCGCA ACATTCCCGA TGTGGCAGAT
CGTGCCAGCG AAGAGACCGA CCGGGCCCTG GAGCTGCGGA CGCGCGACCG TCAGCGCAAG
CTGGTGGCCA AGATCGACGC TGCGATCCGC CGGATCGACG AAGGGGAATA TGGCTATTGT
GACGTGACCG GAGAGCCGAT CTCCCTGAAG CGTCTCGATG CCCGACCGAT CGCCACCATG
AGCCTTGAGG CCCAGGAGCG GCACGAGCGG CGCGAGAAGG TCCATCGCGA CGACTAA
|
|---|
| Protein sequence | MLGKFEETKM MGQTEGAEMK QDVFLPEDYR PAEDEPFMNE RQMEYFRRKL LNWKAELLDE
SRDTIEGLQE NTRNIPDVAD RASEETDRAL ELRTRDRQRK LVAKIDAAIR RIDEGEYGYC
DVTGEPISLK RLDARPIATM SLEAQERHER REKVHRDD
|
|---|
| |