| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0867 |
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| Symbol | |
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| ID | 4076237 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 922143 |
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| End bp | 924650 |
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| Gene Length | 2508 bp |
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| Protein Length | 835 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006169 |
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| Product | penicillin-binding protein 1A |
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| Protein accession | YP_612862 |
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| Protein GI | 99080708 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG5009] Membrane carboxypeptidase/penicillin-binding protein |
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| TIGRFAM ID | [TIGR02074] penicillin-binding protein, 1A family |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.371617 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGATCAGAT TCATTCTGTC GATCTTTGGA TCCATATTCA GTACCATCAC CCTTGGCATC
GGGGTGGTAG CCCTGTCCAT TGGGGCGATC TTCTGGGTCT ACGGCCGCGA TCTGCCGAGC
CATGAGTCGC TGGCGCAGTA TCAGCCGCCC ACCATCAGCC GGATCTTTTC GGGCGAGGGA
CAGCTGATCG ACGAATTCGC CAAGGAACGA CGCCTGTTCA CACCGTCCGA GGAAATCCCG
GCGCTGGTCA AACAAGCCTT CATCTCGGCG GAGGACAAGA ATTTCTACTC TCACGCGGGC
TATGACGCAC GCGGTATTCT CGCCGCCGCG GTCGAGGCGG TGAAATCGCG CGGTGAAAAC
GTGCGCGGGG CCTCGACGAT CACCCAGCAG GTGATGAAGA ACTTCCTTTT GTCCGGCGAC
CGTCGCGCCG AGCGCAAGAT CAAGGAAATC ATCCTCGCCA CCCGCCTTGA AGAAACGCTC
TCCAAGGACA AGATCCTCGA GCTCTACCTC AATGAGATCT TTCTCGGTCA GAACTCCTAT
GGGGTGACGG CAGCCGCACA GACCTATTTC AACAAGACCC TCGGCGAGCT GGAGCCGCAT
GAGGCCGCAA CCCTGGCCTC GATGCCCAAA GCGCCCTCGG ATTATCACCC GGTGCGGCAG
CGCGAACGCC TTCTCAACCG TCGCAACTAT GTGCTGCGCG AAATGAAAGA GAACGGCTAC
ATCACCGAAG CCGTCTACGA GGTGGAACGC AACCAGCCGC TGCGCTCGGT TCAGAACGGT
GATTTCGACG CCTTCCGCAC CGCCTTGCCG CCGCGCGATT ATTTCACCGA TGAAATCCGC
CGACAGTTGT CAGTCGACTT TGGCGAGGGC GAGTTCTTTA CCGGTGGTTT CACCATCCGC
GCCACCATCG ACGAGGAAAT GCAGGACGAA GCAGCGCTTG CCATGCGCAA GGGGCTTGAG
GAATTTGATC GCAGCACGGG GATCTGGCAG GGTCCGATTG CCGAGATCGA CCCCGCGCGC
CTTGCATCCG AGGAGAGCTG GCGCGAGGCG CTGAGCGAAG CCGAAGCTGC CCGTGATATC
ATCACCGAGG ATGGCGCCTG GCATCCGGCT GTTGTGCTCA AGGTCGAAGA CAATGCGCTC
ACGGTTGGGG TCGAGGGCTT TGGCGGCACC GGCACCATTC CACGCTCTGA CATCAAGTGG
ATGAAGGGCA ACTTCTTCGA CAACTTCAAA CCCGGCGACG TGATTCACGC CATGGCGATC
CGCGAGGGCG AGGCTGTCAA ACACTGGTCG GCGCGTCAGG TGCCCGAAGT GCAGGGCGGC
TTTGTGGCGA TGGATGTGAA CTCCGGCCGC GTTCTGGCCA TGCAGGGGGG CTTTTCCTAC
CAGCACTCGG TGTTCAACCG GGCCACGCAG GCGCAACGTC AGCCGGGTTC GAGCTTCAAA
CCCTTCGTTT ATGCGGCGGC GCTCGACAGT GGCTATAGCC CCGCAACCAT CGTGATCGAC
GCCCCGATCG AGATCAACAC GCCCCAGGGT GTCTGGCGGC CCAAGAACTC CACCAATAAA
TTCTATGGCC CCACACCTCT GCGCACCGGC ATCGAGATGA GCCGGAACCT GATGACCATC
CGTCTGGCGC AGGAGGTGGG CATGCCGGTT GTGGCGGGCT ACGCCGAGCG CTTTGGCGTC
TATGACAACA TGGGCACCTT CCTTGCAAAC TCGCTCGGCT CTGAGGAGAC GACGCTGTAC
AAAATGGTGG CTGCCTATGC GATGTTTGCC AACGGGGGCG AGCGTGTCGA ACCCACGCTG
GTGGACCGTA TTCAGGACCG CTTTGGCCGC ACCATCTACC GTCACGATGA CCGCGATTGC
GTTGATTGTA GCGCCACCGA GCTTGAGCAA GGGATCGCGC CCAAGATCGT GACCAACCGC
GAACAGGTGA TGGACCCGAT CACCGCCTAT CAGCTCACTT CGATGCTAAA GGGCGTGGTC
GATCGCGGCA CCGCGTCAAG CGTGATCAAC CTGCCGGTGC CCGCAGCGGG CAAGACCGGT
ACCACCAACG ACGCGCGCGA TGCGTGGTTT GTGGGCTTCA CCTCCAACAT CGTGGCGGGC
TGCTACTTTG GCTATGACAA CCCCCGTCCC ATGAAGGGCG GTCGGGGGTA CGGCGGCACG
CTCTGCGGTC CCGTGTTCCA GCAGTTCATG CAGAAGGCGA CCGAGAAATA CGGAGGCGGC
CCGTTCGACG TGCCCCCGGG TGGTCACTTC ATCAAGATCG ACCGCTACAC TGGCGGACGT
CTTCCCAACG AGGCAGGCGG GGCAAATGTG GTCGCCGAGT ATTTCCGCGA TGGTGAGGAG
CCGATCTTTG GTCTCACCTT TGATGGGGGC TTTGGCATGG GGTCGAACCT GCCGCTCTTT
GAAGAGGTCA CCGAATCCGG CCGTCAGGTC ACCACCTCCA GCGGCGGAAC CGCCGTCCTC
GGCCCAAAGG CGAGCTTCGG CGACGTCAGC TCTGGCGGGC TTTACTGA
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| Protein sequence | MIRFILSIFG SIFSTITLGI GVVALSIGAI FWVYGRDLPS HESLAQYQPP TISRIFSGEG
QLIDEFAKER RLFTPSEEIP ALVKQAFISA EDKNFYSHAG YDARGILAAA VEAVKSRGEN
VRGASTITQQ VMKNFLLSGD RRAERKIKEI ILATRLEETL SKDKILELYL NEIFLGQNSY
GVTAAAQTYF NKTLGELEPH EAATLASMPK APSDYHPVRQ RERLLNRRNY VLREMKENGY
ITEAVYEVER NQPLRSVQNG DFDAFRTALP PRDYFTDEIR RQLSVDFGEG EFFTGGFTIR
ATIDEEMQDE AALAMRKGLE EFDRSTGIWQ GPIAEIDPAR LASEESWREA LSEAEAARDI
ITEDGAWHPA VVLKVEDNAL TVGVEGFGGT GTIPRSDIKW MKGNFFDNFK PGDVIHAMAI
REGEAVKHWS ARQVPEVQGG FVAMDVNSGR VLAMQGGFSY QHSVFNRATQ AQRQPGSSFK
PFVYAAALDS GYSPATIVID APIEINTPQG VWRPKNSTNK FYGPTPLRTG IEMSRNLMTI
RLAQEVGMPV VAGYAERFGV YDNMGTFLAN SLGSEETTLY KMVAAYAMFA NGGERVEPTL
VDRIQDRFGR TIYRHDDRDC VDCSATELEQ GIAPKIVTNR EQVMDPITAY QLTSMLKGVV
DRGTASSVIN LPVPAAGKTG TTNDARDAWF VGFTSNIVAG CYFGYDNPRP MKGGRGYGGT
LCGPVFQQFM QKATEKYGGG PFDVPPGGHF IKIDRYTGGR LPNEAGGANV VAEYFRDGEE
PIFGLTFDGG FGMGSNLPLF EEVTESGRQV TTSSGGTAVL GPKASFGDVS SGGLY
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