Gene TM1040_0776 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0776 
Symbol 
ID4078088 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp832173 
End bp833177 
Gene Length1005 bp 
Protein Length334 aa 
Translation table11 
GC content59% 
IMG OID638006074 
Productphage integrase 
Protein accessionYP_612771 
Protein GI99080617 
COG category[L] Replication, recombination and repair 
COG ID[COG4974] Site-specific recombinase XerD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value0.228831 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value0.0322595 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGCCAGACA TCAGCATCGG ACGTTTCAGG GGCGGATTCT GCGTCTATTG GCATGAAGGT 
GGCAAGCGAA GACGTTATAG CCTTAAGGCA CGCACCCGAG AGGAAGCCGA GCCAGAAGCG
ATAGATGTCT ACCGGCGCGA GACACTCGAC CAACGCCGGG GAAGAGACAC GGTTGCTGAC
ATCTGGGAGG CTTACCGCCA AGACCTTGGA GAAAAGCCCA CAGCCAAGAC GATGGGCTAT
ACTGGGAAGG CTGTTCTCGC TCACTTCGGT GCATATCGGC CCGATCAGAT CACCACGTCC
CTCTGCCGCA AGTATGTGAC CAATCGCACT GCCGAGGGTA AATCGCAGGG CACCATTCAC
ACGGAACTAG GCCACCTTCG CAGCGCAATG CGCTTTGCCG TGAAGGAGCG GATCATCGAC
AAGGCCCCAT CCATCGAGCG CCCGGCCAAG CCGACGCCAA AAGAACGGTA TCTCGAAAAG
GAAGAAATCG CGGCCCTGAT CGACGCGGCA TCCGCGCCAC ATATCGCCCT AGCTATCCAC
CTGCTCTTCG CAACTGCCGG GCGGATCGGT GCCGTTCTGG ACCTGACATG GGACCGGGTA
GACTTCCAGC GCGGGATCAT CAATCTGCGC CTTGACGACT CGAAGACCCG CAAGGGCCGT
GCCATTGTCC CGATGAACTC CGGGATCCGG GCCGCGCTCC AAACCGCTCA TGACGCCGCA
CTCAGCGACT ATGTGGTCGA ATATGCTGGC GGCAAGGTGA AGAACATTCG GAAAGGGTTT
GAGGCGGCCT GCCGTAGAGC CGAACTTGAC GGAGTGACCC TGCACACGAT TCGGCATTCC
AGCGCGGTTG CTATGGTATC AAACGGCGTT CCGCTGGAGA AAGTTGCGCA GTACCTAGGG
CACTCCAATG TTGCCATCAC CTACCAGACG TACGCGAGAT TCGCGCCCGA TCACCTGCAG
GATGCAGCTG AGATCCTGGA CTTCGTTCAA ATCAGGGAGG CATGA
 
Protein sequence
MPDISIGRFR GGFCVYWHEG GKRRRYSLKA RTREEAEPEA IDVYRRETLD QRRGRDTVAD 
IWEAYRQDLG EKPTAKTMGY TGKAVLAHFG AYRPDQITTS LCRKYVTNRT AEGKSQGTIH
TELGHLRSAM RFAVKERIID KAPSIERPAK PTPKERYLEK EEIAALIDAA SAPHIALAIH
LLFATAGRIG AVLDLTWDRV DFQRGIINLR LDDSKTRKGR AIVPMNSGIR AALQTAHDAA
LSDYVVEYAG GKVKNIRKGF EAACRRAELD GVTLHTIRHS SAVAMVSNGV PLEKVAQYLG
HSNVAITYQT YARFAPDHLQ DAAEILDFVQ IREA