| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0734 |
|---|
| Symbol | |
|---|
| ID | 4076104 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 791464 |
|---|
| End bp | 792066 |
|---|
| Gene Length | 603 bp |
|---|
| Protein Length | 200 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638006031 |
|---|
| Product | OmpW |
|---|
| Protein accession | YP_612729 |
|---|
| Protein GI | 99080575 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3047] Outer membrane protein W |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 28 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAACTC TGGTTTCCGC CCTCGCACTG GGCGTTGCCG CCGCAAGCTT TGCTGCCCCC
GCCATGGCCC AATCTCAGGG CGACTGGACC TTTGGTGTCG GTATCATCAA CGTGAACCCG
AAGTCCGACA ATGGCACGCT TGCCGGCGCT GCGGCCACGA TTGACGACAA CACCCAGCTG
TCGCTCACGG CGGAGTATTT CATCCGCGAC AACCTCGGCA TTGAACTCTT GGCGGCCTCG
CCGTTTGAGC ACGACATCGC GCTTGGAGGC AGCAACATCG GCTCCACCAA ACAACTGCCG
CCGACCCTGT CGCTGGTCTA TCATATCCCC ACCAAGGGCA AGGTGACCCC CTTTGTTGGT
GTCGGCGTGA ACTACACCAC CTTCTTCTCG GAAGAGTCGT CGCTTGGCAC GCTCGACCTC
GACAACAGCT TTGGCTTTGC CGCAACGGTG GGGGCTGACT GGCAGACCTC GGAGCGCGGC
GCGTTGCGTC TGAACGTGCG CTACATGGAC ATCGACACCG ACGCACGGCT CAACGGTGCA
CCCATTGGCA AGGCGGAGAT TGATCCGGTC ACTGTGGGTG TCTCTTACGT GCACCGCTTC
TGA
|
|---|
| Protein sequence | MKTLVSALAL GVAAASFAAP AMAQSQGDWT FGVGIINVNP KSDNGTLAGA AATIDDNTQL
SLTAEYFIRD NLGIELLAAS PFEHDIALGG SNIGSTKQLP PTLSLVYHIP TKGKVTPFVG
VGVNYTTFFS EESSLGTLDL DNSFGFAATV GADWQTSERG ALRLNVRYMD IDTDARLNGA
PIGKAEIDPV TVGVSYVHRF
|
|---|
| |