| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0715 |
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| Symbol | |
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| ID | 4076992 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 769931 |
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| End bp | 771628 |
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| Gene Length | 1698 bp |
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| Protein Length | 565 aa |
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| Translation table | 11 |
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| GC content | 61% |
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| IMG OID | 638006012 |
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| Product | extracellular solute-binding protein |
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| Protein accession | YP_612710 |
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| Protein GI | 99080556 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0747] ABC-type dipeptide transport system, periplasmic component |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.109389 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACATTGA AATCCCTTCT GCTGGGTGCT GTGGCAACTG CCGCTGTCGC CCCTGCGGCT
TTTGCCGAGC GTGGCTCGGA CGGCCAGGTC AACATTATTT ATTGGCAGGC TCCGTCCATC
ATGAACCCGT TCCTGTCCGG CGGCACCAAG GACGTTGAAG CGGCCTCGCT CGTGATCGAG
CCTCTGGCGC GCTACAACTC CTCCGGCGAG ATGGTTCCGT GGCTGGTCGA AGAAGTCCCC
ACCGTTGAAA ACGGCGGCGT GAGCGAAGAC CTGACCCAGA TCACCTGGAA ACTGAAGCCG
GGCATCAAGT GGTCCGATGG TTCCGACCTT ACGTCTGCGG ACGTGAAGTT CACATATGAG
TACTGCACCC ACCCCGAGGG CGGCTGCGCA CAGGTCACCA AGTTCGAAGG CGTTACCTCT
GTCGAGACCC CCGACGACTC CACCGTGGTG GTGACCTTCG ATAAAGCGAC CCCCTTCCCC
TATGGCCCCT TCGTCGGCGG TGAAAGCCCG ATCATTCAGG CAGCACAGTT CGCTGAGTGC
CTTGGTGCCA AAGCACCTGA GTGTACCGAA GCCAACTTCA ACCCGATCGG CACCGGCCCG
TTTGTGGTCG ACGAGTTCAA GCCGAACGAC GTGATCACCC TCTCCGCGAA CCCGAACTAC
CGTGACCCGG CCAAGCCCGC GTTCGCGAAG GTTCTGTTCA AAGGTGGCGG CGATGCAACC
GCAGCCGGTC GCGCCGTGAT GGAAACCGGC GAATTCGACT ACGCATGGAA CCTCCAGCTG
GCCCCCGATG TCATCGCGCA GATGGAAGCA GGCGGCAAAG GCCAAGCGGT TGCAGGCTTT
GGTCCGCTCC TCGAGCGCAT CATGCTCAAC AACACCAACC CCTCCGCGGA TCTCTCCCCG
GAAGAGCGTT CGGTGATCCG TCCGCACCCG TTCCTGTCCG ATCCGGCGGT TTACAAAGCC
ATGTCCATGG CAATCGACCG TCCGCTTCTG GTGGAAATCG GCTATGGCAA AGCAGGTCGC
GTGTCCTGCT CCTGGGTTCC GGCCCCCGAA GCCTTTGCGA TCAGCCCCGA AGGCTGTGAG
ACTCAGGACA TCGCCGGTGC AAACGCCATG CTCGACGCAG CAGGTATCGT TGACACCGAT
GGTGACGGCA TCCGCGAAAA AGACGGTGTT CCGCTGAAGA TCCTGTACCA GACCTCGACC
AACGCCGTCC GTCAGGACTT CCAGGCGCTG ATCAAACAGT GGTGGAGCGA GATCGGCATC
GAAACCGAAC TGCGTAACAT CAACTCCTCC GTGTTCTTCG GCGGCGACCC GGGCTCCCCG
GACACCTTCC AGAAGTTCTA CGCAGACGTT GAAATGTACG CCAACACCTT CAACGGCACT
GACCCGCAGT CCTACTTCGG CAACGGTCTG TGCGACAAAG CCCCGACTCC GGCCTCCCAG
TGGCAGGGTG AGAACATCTC CCGCTTCTGT GACGAAGAGT TCGACGCGCT GCACGCAGAG
CTTTCGCAAA CCGCAGACAT GGCAAAACGG ATCGAGATCG GTCAGCAGCT CAACACCATC
ATCTTTGAGC GTGGTGGGAT GATCCCGCTG GTCCACCGTG GCCGTCTGTC CGCACACTCC
AACACCCTTG GTGGTGTCGA CCTGAACGTG TGGGACAGCG AGCTGTGGAA CGCAGCTGAC
TGGTACCGCT CCGAATAA
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| Protein sequence | MTLKSLLLGA VATAAVAPAA FAERGSDGQV NIIYWQAPSI MNPFLSGGTK DVEAASLVIE
PLARYNSSGE MVPWLVEEVP TVENGGVSED LTQITWKLKP GIKWSDGSDL TSADVKFTYE
YCTHPEGGCA QVTKFEGVTS VETPDDSTVV VTFDKATPFP YGPFVGGESP IIQAAQFAEC
LGAKAPECTE ANFNPIGTGP FVVDEFKPND VITLSANPNY RDPAKPAFAK VLFKGGGDAT
AAGRAVMETG EFDYAWNLQL APDVIAQMEA GGKGQAVAGF GPLLERIMLN NTNPSADLSP
EERSVIRPHP FLSDPAVYKA MSMAIDRPLL VEIGYGKAGR VSCSWVPAPE AFAISPEGCE
TQDIAGANAM LDAAGIVDTD GDGIREKDGV PLKILYQTST NAVRQDFQAL IKQWWSEIGI
ETELRNINSS VFFGGDPGSP DTFQKFYADV EMYANTFNGT DPQSYFGNGL CDKAPTPASQ
WQGENISRFC DEEFDALHAE LSQTADMAKR IEIGQQLNTI IFERGGMIPL VHRGRLSAHS
NTLGGVDLNV WDSELWNAAD WYRSE
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