| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0692 |
|---|
| Symbol | |
|---|
| ID | 4077359 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | + |
|---|
| Start bp | 742178 |
|---|
| End bp | 743827 |
|---|
| Gene Length | 1650 bp |
|---|
| Protein Length | 549 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 638005989 |
|---|
| Product | DNA repair protein RecN |
|---|
| Protein accession | YP_612687 |
|---|
| Protein GI | 99080533 |
|---|
| COG category | [L] Replication, recombination and repair |
|---|
| COG ID | [COG0497] ATPase involved in DNA repair |
|---|
| TIGRFAM ID | [TIGR00634] DNA repair protein RecN |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 10 |
|---|
| Plasmid unclonability p-value | 0.0261152 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 4 |
|---|
| Fosmid unclonability p-value | 0.000301908 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | decreased coverage |
|---|
| |
Sequence |
| Gene sequence | ATGCTGCGCG CGCTTGATAT TCGCGACCTT CTGATCATCG ACCATCTGGA GCTGTCGTTC
CAGCCGGGTC TGAACGTGCT GACCGGGGAA ACCGGCGCCG GTAAATCCAT CCTTCTTGAC
TCTCTGGGCT TTGTGCTGGG CTGGCGCGGG CGGGCCGCTC TGGTGCGGCA AGGGGCGGAT
CAGGGCGAGG TCGTGGCCGA GTTCGATCTG CCGGAAGGGC ACGCGGCGCG TGCGGTACTC
GAGGAAGCAG GGCTGCCGGT CTCTGACACA TTGCTGCTGC GACGCGTGAA CACGTCAGAT
GGGCGCAAGA CCGCCTGGGT GAATGATCGA CGCTGCTCTG GCGAAGTTCT GCGGGCGCTC
TCGGACACAT TGCTGGAGCT GCATGGTCAG CACGACGATC GAGGTCTGCT GAACCCGCGT
GGCCACCGGG CGATGCTGGA TGACTTTGCC AATGTTCAGG CGCAGCTTGA TGAGGTGCGC
GCTGCCTGGG GGGCCGCGGC CCGCGCCCGC AAGCAAGTGG AAGAGACCCG CGCCGCTCTG
GAGAGCGTGC GTGCAGAAGA AGAGTTCCTG CGCCATTCTG TGTCGGAGCT CGACAAACTC
AGCCCCGAAC CCGGCGAAGA CGAAAGCCTC GACACCCGCC GGCGCCAGAT GCAGGCCGCC
GAGCGCATCC GCGGCGATAT TGCCCGCGCG CACGGTCTGC TATCGGAAGG CGCCGAAGGC
GCGATGGGCG AGGCGCAGCG CTGGCTTGAG GCGGTTTCCG GAGACGCAGG CGAGGCGCTT
GATGCCCCGC TGGCCGCACT GAGCCGCGCG ATGATCGAAC TTGGCGAAGC GCAGGATGGC
GTCGAGCGCT TTCTGGAAGG ATTAGATTTC AATCCCGGCG ATTTGGAAGA CTGCGAGGAG
CGCCTCTTTG CCATTCGCGC ATTGGCGCGC AAACATGATG TGCAGCCGGA TGATCTGGCC
GATCACGCGG ATGTCCTGCG CGAGAAACTG CAGGCGCTGG ATGCTGGGGA TCAGAACCTC
GCGGACCAGG AAGATGCCCT TCGCGCAGCG GAGGCGACGT ATGCGGCGGC TGCCGAACGC
CTATCGGCCA AACGGCGGGA CAGTGCCGCA ACGCTTGACG CAGCCGTGAT GGCAGAACTG
GCGCCGCTCA AGATGGAGCG CGCAGTGTTT GAAACCAAGA TCACGGAGGC CGAGCCCGGC
CCGGATGGCG TGGATGAGGT CGCGTTCACT GTTGCCACCA ACCCAGGCGC GCCTGCGGGT
CCGCTGAACA AGATCGCTTC GGGTGGCGAG CTGAGCCGCT TTCTCTTGGC GCTCAAGGTC
TGTTTGCGGG GCGAGGATGC CGCAAAGACG CTGATCTTTG ACGAAATCGA CCGTGGTGTT
GGGGGCGCAA CCGCCGATGC GGTCGGGCGC AGACTGAAGG CGCTTGCCGA TGGCAGTCAG
GTATTGGTCG TCACACATTC TCCTCAGGTT GCTGCGCAAG GAGCCCACCA TTGGCGGGTC
CAGAAATCCG TGACCGAGGG CGTGACGCTG TCGCAGGTGG TGCCCCTGAA TGAGGGCGAG
CGCGTCGATG AGATCGCGCG CATGGTCTCT GGTGACAAGA TCACACCAGA AGCCCGCGCC
GCCGCCAAAG CGCTTCTGGC AGACGTCTAA
|
|---|
| Protein sequence | MLRALDIRDL LIIDHLELSF QPGLNVLTGE TGAGKSILLD SLGFVLGWRG RAALVRQGAD
QGEVVAEFDL PEGHAARAVL EEAGLPVSDT LLLRRVNTSD GRKTAWVNDR RCSGEVLRAL
SDTLLELHGQ HDDRGLLNPR GHRAMLDDFA NVQAQLDEVR AAWGAAARAR KQVEETRAAL
ESVRAEEEFL RHSVSELDKL SPEPGEDESL DTRRRQMQAA ERIRGDIARA HGLLSEGAEG
AMGEAQRWLE AVSGDAGEAL DAPLAALSRA MIELGEAQDG VERFLEGLDF NPGDLEDCEE
RLFAIRALAR KHDVQPDDLA DHADVLREKL QALDAGDQNL ADQEDALRAA EATYAAAAER
LSAKRRDSAA TLDAAVMAEL APLKMERAVF ETKITEAEPG PDGVDEVAFT VATNPGAPAG
PLNKIASGGE LSRFLLALKV CLRGEDAAKT LIFDEIDRGV GGATADAVGR RLKALADGSQ
VLVVTHSPQV AAQGAHHWRV QKSVTEGVTL SQVVPLNEGE RVDEIARMVS GDKITPEARA
AAKALLADV
|
|---|
| |