Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0690 |
Symbol | lpxC |
ID | 4077357 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | + |
Start bp | 739957 |
End bp | 740904 |
Gene Length | 948 bp |
Protein Length | 315 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 638005987 |
Product | UDP-3-O-[3-hydroxymyristoyl] N-acetylglucosamine deacetylase |
Protein accession | YP_612685 |
Protein GI | 99080531 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0774] UDP-3-O-acyl-N-acetylglucosamine deacetylase |
TIGRFAM ID | [TIGR00325] UDP-3-0-acyl N-acetylglucosamine deacetylase |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.0379633 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 4 |
Fosmid unclonability p-value | 0.000248661 |
Fosmid Hitchhiker | No |
Fosmid clonability | decreased coverage |
| |
Sequence |
Gene sequence | ATGAGGCACA TTGTGCAGAA TACGCTCAAA GCAGCAGTCA CCTTTGAAGG CACCGGCCTG CATTCTGGCA AACCGGCCAA GATGGTTGTG CATCCGGCTC CGGCTGGTCA CGGCATCACC TTCGTGCGTG TGGACATTGC TCTGGGCAAT ACCCTCATTC CGGCACGCTG GGATATGGTG GAGCGCACCG CGCTCTGCAC CCGCCTCGTA AACGGGGCCG GGGTATCCGT GTCGACGGTC GAGCACATCA TGGCAGCGCT TGCAGGCTGT GGTGTTCACA ATGCACGTGT GGAGATCGAC GGGCCCGAAG TTCCGATCAT GGACGGCTCC TCGGCAGAGT TTGTGCGTGA GATCATGGCC ACGGGTATTC AGCGCCTTGG CGTCCCCGTG CGCGCCTGGA AAGTGCTGAA GCCGGTTATG GTTGAAACCG AAGATGCGCG CGCGACATTG CTGCCCTGCG ATCGACTAAA AATCTCCTTT GATATCGACT TTGCGGAAGA AGGTATTGGC CATCAGAGCC GTGAGCTGGA TCTGCGCAAC GGTACCTTCG CGCGCGAACT TTGCGACAGC CGCACCTTCT GCCGCCGCGC AGATGTCGAG ACGATGCAGG CCAACGGTCT TGCGCTTGGT GGTGTGCCGG GCGAAAACGC GGTCGTGTTT GATGGCCCCA CCGTGCATGC AGGGTCCGGC CTTCGCCATC CTGATGAGCC TGTGCGTCAC AAGATGCTGG ATGCGCTTGG TGATCTTGCA TTGGCGGGCG CGCCGATCTT TGGTCACTAT GTTGGTGAAC GGGCAGGGCA CTCGCTCACC AATACGCTTC TTCGTGCGCT TTTTGACACC CCTGGCGCAG TGCGCGAAGT CACCTGCGAC CCGATCATGA CCGCGCGCCT GCCTGGTCAG GGGCTCGTCT GGTCCGAAAT CCCCGCGCAG GTGCGCCGCG TCGCCTGA
|
Protein sequence | MRHIVQNTLK AAVTFEGTGL HSGKPAKMVV HPAPAGHGIT FVRVDIALGN TLIPARWDMV ERTALCTRLV NGAGVSVSTV EHIMAALAGC GVHNARVEID GPEVPIMDGS SAEFVREIMA TGIQRLGVPV RAWKVLKPVM VETEDARATL LPCDRLKISF DIDFAEEGIG HQSRELDLRN GTFARELCDS RTFCRRADVE TMQANGLALG GVPGENAVVF DGPTVHAGSG LRHPDEPVRH KMLDALGDLA LAGAPIFGHY VGERAGHSLT NTLLRALFDT PGAVREVTCD PIMTARLPGQ GLVWSEIPAQ VRRVA
|
| |