| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0679 |
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| Symbol | murD |
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| ID | 4077287 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 726193 |
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| End bp | 727596 |
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| Gene Length | 1404 bp |
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| Protein Length | 467 aa |
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| Translation table | 11 |
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| GC content | 63% |
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| IMG OID | 638005976 |
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| Product | UDP-N-acetylmuramoyl-L-alanyl-D-glutamate synthetase |
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| Protein accession | YP_612674 |
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| Protein GI | 99080520 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG0771] UDP-N-acetylmuramoylalanine-D-glutamate ligase |
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| TIGRFAM ID | [TIGR01087] UDP-N-acetylmuramoylalanine--D-glutamate ligase |
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Plasmid Coverage information |
| Num covering plasmid clones | 27 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.121752 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCCCGG TCAAAGGTGT CGCAGGGCAA AACGTGGCTG TGCTGGGGCT TGGGCGCTCG
GGGCTCTCTG CGGCGCGGGC CTTGCGCGAA GGCGGGGCAG AGGCGATCTG TTGGGACGAT
AACCCCGCTG CACGCGCCAC TGCCGAGGCA GAGGGCTTCA CCTGTCGTGA ATTGACCAAG
CAGGGCGCAT TCGATGGCAT CTCCGCCCTC ATCGTGTCGC CCGGGATTGC GCATCTTTAC
CCGAAACCCA ATCCGGTTAT CCGGGCTGCC CTGGTGGCGG GTGTGCCGGT GGATAATGAC
ATTGGCCTGT TCTTCCGCTC TGTTGCGACC TCGGAGTGGG ACGAGTTTGA CACCGCGCCG
AAGGTGATTG CCGTAACGGG CTCAAACGGC AAATCGACGA CGGTTGCCTT GCTGCACCAC
ATTCTTGAAC ATGTCGGGCG CAACAGTCAG ATGGCGGGCA ATATCGGGCG CGGGGTGCTG
GACATCGACC CACCCGTGGA CGGTGGTGTC GTGGTGCTGG AGCTCTCCTC CTATCAAACC
GATCTGGCGC GCGCGCTCAC ACCGGATGTC GCGGTCTTCA CCAATCTGAC GCCGGATCAT
CTGGACCGTC ACGCTGGAAT GGGGGGGTAT TTTGCGGCCA AGCGGCGCCT TTTTGCAGAG
GGTGGCCCGG ATCGCGCGGT CATCGGAGTT GATGAGGACG AGGGGCTTTT CCTTGCAGGG
CAACTGAGCG AAGGCGAGAG CGATGATCGC GTGATCCGCA TCTCAGCGCG CCAGAAGCTC
TCGGGCGGGG CAGGGTGGAC CGTCTTTGCT CGCAAGGGGT TCTTGTCGGA GTATCGCAAG
GGGCGGCAGG CCGGCTCGAT TGATCTTCGC GACATTCCCG GTCTGCCCGG AGCGCATAAC
CATCAGAACG CCTGCGCGGC CTACGCTGCA GCCCGTACGC TTGGGCTGGC GCCGCGGGTG
ATCGAGGCGG CGATGCGGAC CTATCCGGGG CTGCCGCACC GCAGCCAGCG CATCGCGGAG
GCGGATGGGG TATCTTATGT CAATGACAGC AAGGCCACCA ACGTCGACAG CGCCGCCAAG
GCGCTGAGCG CGTTCAAAAA TATCCGCTGG ATCTGCGGCG GCTTGGAAAA GGAAGGCGGG
CTTGAGGCGC TGAAAGGTGC CACGGATGAT GTGCTCAAGG CCTATGTGAT CGGCCGCGAG
GCGGCGCAAT TTGCCATGCA GCTCGATGTG GAGGCCGAGG TCTGCACCAC CATGGCGCAA
GCTGTCTCGC GTGCCATGGC CGAGGCCGGC CCGGGGGAGA CAGTGCTTCT GGCCCCTGCG
GCGGCGAGCT TTGATCAATA CGACAGTTTT GAAAAACGCG GTGAGGATTT TATCGCTGAG
GTCACGGCGC GCCTGAACGG CTAG
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| Protein sequence | MIPVKGVAGQ NVAVLGLGRS GLSAARALRE GGAEAICWDD NPAARATAEA EGFTCRELTK
QGAFDGISAL IVSPGIAHLY PKPNPVIRAA LVAGVPVDND IGLFFRSVAT SEWDEFDTAP
KVIAVTGSNG KSTTVALLHH ILEHVGRNSQ MAGNIGRGVL DIDPPVDGGV VVLELSSYQT
DLARALTPDV AVFTNLTPDH LDRHAGMGGY FAAKRRLFAE GGPDRAVIGV DEDEGLFLAG
QLSEGESDDR VIRISARQKL SGGAGWTVFA RKGFLSEYRK GRQAGSIDLR DIPGLPGAHN
HQNACAAYAA ARTLGLAPRV IEAAMRTYPG LPHRSQRIAE ADGVSYVNDS KATNVDSAAK
ALSAFKNIRW ICGGLEKEGG LEALKGATDD VLKAYVIGRE AAQFAMQLDV EAEVCTTMAQ
AVSRAMAEAG PGETVLLAPA AASFDQYDSF EKRGEDFIAE VTARLNG
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