| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0579 |
|---|
| Symbol | |
|---|
| ID | 4076144 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 616034 |
|---|
| End bp | 617911 |
|---|
| Gene Length | 1878 bp |
|---|
| Protein Length | 625 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 59% |
|---|
| IMG OID | 638005876 |
|---|
| Product | potassium efflux system protein |
|---|
| Protein accession | YP_612574 |
|---|
| Protein GI | 99080420 |
|---|
| COG category | [P] Inorganic ion transport and metabolism |
|---|
| COG ID | [COG0475] Kef-type K+ transport systems, membrane components
[COG0569] K+ transport systems, NAD-binding component |
|---|
| TIGRFAM ID | [TIGR00932] transporter, monovalent cation:proton antiporter-2 (CPA2) family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.0224843 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 1 |
|---|
| Fosmid unclonability p-value | 0.000000778205 |
|---|
| Fosmid Hitchhiker | Yes |
|---|
| Fosmid clonability | hitchhiker |
|---|
| |
Sequence |
| Gene sequence | ATGGATAGTT TTCTCTCTCA GGCCTCAATC TACCTCGCCG CCGCCGTGAT CGCCGTACCC
ATCGCCGCCC GGTTGGGTTT GGGGTCGGTG CTCGGATACC TCGCCGCGGG CATCATCATC
GGTCCGATCT TGGGTCTTGT CGGGGCGGAA GCCGAGGAAC TCCAGCATTT TGCCGAGTTT
GGCGTCGTGA TGATGCTGTT TCTGATCGGC CTCGAGCTCG ACCCGCGCGC GCTCTGGGCG
ATGCGACACC ACTTGATCGG ACTCGGTGGG TTACAAATCA CCGCTTCAAC CGCACTCCTT
GCGGGGGCTG CGATCTTTTT TGGCCACAGC TGGCAAGTGG GCCTTGCCGT CGGGCTGGCG
CTCTCGCTGT CATCAACAGC CATCGTGCTG CAAACGCTTT CGGAAAAAGG GCTGACGCGC
ACTGGAGGGG GCAGAGCGAC CTTCTCTGTC TTGCTCACCC AGGACATTGC AGTCATTCCG
ATCCTGGCTC TGCTGCCGCT GTTGGCGACA CAACATGCAC TATCCCTGTC CGAGGATGGC
TCCATCGTGC GCGCAGAAGA AGCGCATGGC GCGGGACACC ACTCGCTCTC GCTCGTAGAA
GGGCTGCCTG GCTGGGCCGT CACCCTGACG ACAATCGGCG CCATCGCCTT CGTGATTCTG
GCGGGCGTCT ATCTGACCCG TCCGGTGTTT CGCTTCATTC ACGCCTCCAA CCTGCGCGAG
ATGTATACGG CACTGGCCCT TCTGATCGTT GTTGGAATTT CCTTCCTGAT GACCTTGGTC
GGGTTGTCCC CGGCGTTGGG CGCCTTTCTC GCCGGTGTTG TGCTCGCGAA CAGCGAGTTC
CGCCACGAGC TGGAGAGCGA CCTCGAACCC TTCAAAGGGC TCCTGTTGGG GCTATTCTTC
ATCACCGTCG GAGCAGGTAT CAACTATCGC TTGTTCCTAG CCGAGCCCGG GGATGTGATC
GGTCTCGCCT TGCTCGTGAT TTTCGCAAAG GGCGCGGTTT TGTATTTCGT CGGCAGGGCC
TTCGGACTGA GAGGGCGCAA TCATTGGCTC TTCACCCTCG GGCTGGCGCA GGCCGGTGAA
TTTGGCTTTG TGCTGCTGGC GTTCTCGCTT CAGCTGAATG TGGTTACGGC CGATCTGTCG
GAGAAACTGC TGCTGGTCAT CGCGCTGACG ATGTTGATCA CGCCGCTTTT GTTCATCCTC
TACGAAATCC TATCCAAGCG GATGAAGGAC GCCCAAGTCG AACATACGCC CGACGAGATT
GACGAAGAAG GCACAGTGAT CATCGCCGGG ATCGGGCGTT TTGGTCAGAT CGTGCATCGC
CTTGTGAATG CGAGTGGCTT CAAGACCGTT CTTTTGGACA GCGACATGAA GGCGGTACAG
CTGATGCGCC GCTTTGGGGT CAAGAGTTTC CTCGGGGATC CAACCCGTCC AGAGCTGCTG
AAAGCGGCTG GCATCAGCAA GGCAAAAGTG CTGGTTGTCG CGCTCGACGA TCAGGAAAGC
GCCACAAAAC TCGTGACTTA CGCCCGGCGG AACTATCCAG ACATCCATAT TGTCGCCCGC
GCCTATGATC GCAACCATGT GTTTGAGCTT TATAAAGCGG GGGCCAATGA TATCGTGCGC
GAAATGTTCG ACAGCTCGCT GCGGGCCGGT CGCTATGTGC TCGAGAATAT CGGACTAAGC
GAGTATGAGG CGGCACAGGC CGAACAGACC TTTTACGCGC ATGATCGCCA CACCATCCGA
GAGCTCGCAG GGCATTGGAT TCCGGGCACT CCCGCAAGCG AGAACCCGGC CTATATCAAA
CGCGCGAGAG AGCTGGAAAA AGACCTGGAA ACGGCGCTGC TGTCGCTAGC TGAAGACCAC
ATCAAACACC GCGCCTGA
|
|---|
| Protein sequence | MDSFLSQASI YLAAAVIAVP IAARLGLGSV LGYLAAGIII GPILGLVGAE AEELQHFAEF
GVVMMLFLIG LELDPRALWA MRHHLIGLGG LQITASTALL AGAAIFFGHS WQVGLAVGLA
LSLSSTAIVL QTLSEKGLTR TGGGRATFSV LLTQDIAVIP ILALLPLLAT QHALSLSEDG
SIVRAEEAHG AGHHSLSLVE GLPGWAVTLT TIGAIAFVIL AGVYLTRPVF RFIHASNLRE
MYTALALLIV VGISFLMTLV GLSPALGAFL AGVVLANSEF RHELESDLEP FKGLLLGLFF
ITVGAGINYR LFLAEPGDVI GLALLVIFAK GAVLYFVGRA FGLRGRNHWL FTLGLAQAGE
FGFVLLAFSL QLNVVTADLS EKLLLVIALT MLITPLLFIL YEILSKRMKD AQVEHTPDEI
DEEGTVIIAG IGRFGQIVHR LVNASGFKTV LLDSDMKAVQ LMRRFGVKSF LGDPTRPELL
KAAGISKAKV LVVALDDQES ATKLVTYARR NYPDIHIVAR AYDRNHVFEL YKAGANDIVR
EMFDSSLRAG RYVLENIGLS EYEAAQAEQT FYAHDRHTIR ELAGHWIPGT PASENPAYIK
RARELEKDLE TALLSLAEDH IKHRA
|
|---|
| |