Gene TM1040_0578 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0578 
SymbolcobT 
ID4076143 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp614997 
End bp616007 
Gene Length1011 bp 
Protein Length336 aa 
Translation table11 
GC content66% 
IMG OID638005875 
Productnicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 
Protein accessionYP_612573 
Protein GI99080419 
COG category[H] Coenzyme transport and metabolism 
COG ID[COG2038] NaMN:DMB phosphoribosyltransferase 
TIGRFAM ID[TIGR03160] nicotinate-nucleotide--dimethylbenzimidazole phosphoribosyltransferase 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value0.000265143 
Plasmid hitchhikingYes 
Plasmid clonabilityhitchhiker 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.51354e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGCTGCCAG ACCTGACGAC GCTTTCTGAT TTCCGTAATG CTCTGGCGCA AGCGCCCGGC 
GCCGATGCTG ACGCGCGCGC GGCCTGCGAG GACCGGAACG GGCAATTGAC CAAACCGCCT
GGGGCGCTGG GGCAGCTTGA AGAGATCGCG ATCTGGTACG GCAGTTGGCG TGGAACGGCG
CGTCCCGAAG TGCGCGCGCC GCAAGTCATT GTCTTTGCCG GAAACCATGG CGTCACCGCG
CGTGGGGTCT CGGCCTTTCC GGCCGAGGTC ACGGTGCAGA TGGTTGCCAA TTTCAAGGCA
GGCGGCGCGG CGATCAACCA GTTGGCCCAG CTCGCTGATG CGCGCATGGA TGTCCATGCG
CTGGAGCTGG ATCGCCCGAC GGCTGATTTC ACGCAGGGCC CCGCGATGAG CGAGGAAGAC
CTGCTGGCCG CGCTGCGCAC TGGCTGGAAT GCGGTCGATC CGGCGAGCGA TGTGCTCGTG
GTGGGCGAAA TGGGGATCGG GAACACGACC TCTGCGGCTG CGATCTGCCA TGCGCTTTAT
GGCGGTGAGC CGGGTGATTG GACGGGCAGG GGCACCGGCG TTGACGACGA GGGCCTTGCC
CTGAAGACGG CTGTTATCGC CGAGGCGGTC GCGCTGCACG GCAGCCGCGA CGGGTTGGAG
GTTCTGCGTT GCCTTGGCGG GCGTGAGATC GCAGCAATGG CCGGGGCGAT CGCTGCGGCG
CGAGTGCTGC GCATTCCGGT TATTCTGGAT GGGTTCATCT GCTGTGCCGC TGCGGCCTCT
CTGGCGCGCC TGCACGATCA GGCGTTGGAT CACGCTGTCG CAGGCCATCA AAGCGCCGAG
GGCGGTCATC AGGCATTGCT GGCGAGACTG GGCAAGGCAC CGCTGCTGTC GCTGGGGCTG
CGCCTTGGAG AGGGCTCTGG GGCGGCACTT GCAATCCAAG TGCTCAAAGG TGCGCTGGCC
TGTCATAGTG GCATGGCCAC CTTTGCCGAA GCCGGAGTAT CGGACGGCTG A
 
Protein sequence
MLPDLTTLSD FRNALAQAPG ADADARAACE DRNGQLTKPP GALGQLEEIA IWYGSWRGTA 
RPEVRAPQVI VFAGNHGVTA RGVSAFPAEV TVQMVANFKA GGAAINQLAQ LADARMDVHA
LELDRPTADF TQGPAMSEED LLAALRTGWN AVDPASDVLV VGEMGIGNTT SAAAICHALY
GGEPGDWTGR GTGVDDEGLA LKTAVIAEAV ALHGSRDGLE VLRCLGGREI AAMAGAIAAA
RVLRIPVILD GFICCAAAAS LARLHDQALD HAVAGHQSAE GGHQALLARL GKAPLLSLGL
RLGEGSGAAL AIQVLKGALA CHSGMATFAE AGVSDG