Gene TM1040_0576 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0576 
Symbol 
ID4076141 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp613567 
End bp614076 
Gene Length510 bp 
Protein Length169 aa 
Translation table11 
GC content57% 
IMG OID638005873 
ProductCarD family transcriptional regulator 
Protein accessionYP_612571 
Protein GI99080417 
COG category[K] Transcription 
COG ID[COG1329] Transcriptional regulators, similar to M. xanthus CarD 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones
Plasmid unclonability p-value5.04519e-11 
Plasmid hitchhikingNo 
Plasmid clonabilityunclonable 
 

Fosmid Coverage information

Num covering fosmid clones
Fosmid unclonability p-value2.18406e-08 
Fosmid HitchhikerNo 
Fosmid clonabilityunclonable 
 

Sequence

Gene sequence
ATGACCAAAT CGAAGAAGCT CGAATTCCGC CCCAATGATT TCATTGTATA CCCAGCCCAT 
GGCGTTGGGC AGATCATTTC GATCGAGGAG CAGGAAGTGG CCGGCTACAA GCTGGAGCTT
TTCGTAATCA CCTTTGAAAA AGACAAGATG ACCCTGCGCG TGCCGACGCA TAAGGCCATC
GACATCGGCA TGCGTTCGCT GTCTTCCCCT GATGTGATCA ATCAGGCGAT GAAGACGCTG
AAAGGCAAGG CCAAGGTCAA GCGCGCCATG TGGTCGCGTC GGGCACAGGA ATACGAACAG
AAGATCAATT CCGGCGATCT GATCTCCATT GCCGAAGTGG TGCGCGACCT GCACCGTACC
GATGATCAGC GCGAGCAGAG CTATTCCGAG CGTCAGTTGT ATGAAGCCGC GCTCGAGCGT
CTGACCCGCG AAGTTGCGGC CGTGTCCGGT GGCGACGAAA TCGCGGCGGC CAAGCAGGTT
GATGAGGTCC TGACCTCCCG CGCTGCCTGA
 
Protein sequence
MTKSKKLEFR PNDFIVYPAH GVGQIISIEE QEVAGYKLEL FVITFEKDKM TLRVPTHKAI 
DIGMRSLSSP DVINQAMKTL KGKAKVKRAM WSRRAQEYEQ KINSGDLISI AEVVRDLHRT
DDQREQSYSE RQLYEAALER LTREVAAVSG GDEIAAAKQV DEVLTSRAA