| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0569 |
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| Symbol | |
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| ID | 4076134 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 605508 |
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| End bp | 607328 |
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| Gene Length | 1821 bp |
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| Protein Length | 606 aa |
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| Translation table | 11 |
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| GC content | 58% |
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| IMG OID | 638005866 |
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| Product | peptidase M3B, oligoendopeptidase-related clade 3 |
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| Protein accession | YP_612564 |
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| Protein GI | 99080410 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG1164] Oligoendopeptidase F |
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| TIGRFAM ID | [TIGR02290] oligoendopeptidase, pepF/M3 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 10 |
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| Plasmid unclonability p-value | 0.0425519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 2 |
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| Fosmid unclonability p-value | 0.00000722694 |
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| Fosmid Hitchhiker | Yes |
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| Fosmid clonability | hitchhiker |
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Sequence |
| Gene sequence | ATGTTCCAAC TCCCTTTCCC TGTGCGCGAT GCCAATGCCT CTTCCGGAGC CGGTGATCTT
GGCAAATTGC CGGAGTGGGA TCTGAGCGAT CTCTACGCAG GCGAAGACGC TGCGGAACTT
TCCCGCGATC TGGACTGGCT GCAGGGTGAA TGCGCTGCCT TTGCCGCCGA CTACGAGGGC
AAGCTTGCAG AGCTCGACGC CGAGGGGCTT CTGACCTGCG TCCATCGCAA CGAAAAAATC
AACAATATCG CCGGGCGCAT CATGTCCTAT GCGGGCCTGC GCTATTACCA GCTGACAACC
GACGCGGACC GCGCCAAATT CCTCTCTGAC GTGCAGGAGA AAGTCACGGT CTTCACCACG
CCGCTGGTGT TCTTCACGCT GGAAATCAAC CGCATCGAGG ATGCCAAACT CGACGCGCTC
TTTGAGGCAA ACGCCGATCT GGCGCGCTAC AAACCCGTTT TTGACCGGAT CCGCGCGATG
AAGCCCTATC AGCTCTCGGA TGAGCTGGAG CGTTTTATGC ACGACCTCGG GATTGTGGGC
GATGCCTGGG AAAAGCTCTT TGACGAGACC ATCGCAGGGC TGACCTTTGA GATCGAGGGC
GAAGAGCTCG GCATCGAGGC GACGCTCAAC TTCCTGACCG AGCAGGACCG CAGCAAGCGC
GAAGCCGCAG CGCGCGAACT TGCCCGCGTC TTTGCCGACA ACATCAAGAT CTTTGCCCGC
GTTCACAACA CGCAGGCCAA AGAGAAAGAG ATCATTGACC GCTGGCGCGG CATGCCGAGC
CCGCAGATGG GCCGGCACCT CTCGAACGAT GTCGAGCCCG AAGTGGTCGA AGCTCTGCGC
GAGGCCGTAG TGGCCGCCTA CCCCAAGCTT TCGCACCGCT ACTATGAGCT CAAACGCAAA
TGGCTCGGTC TCGATCGCAT GCAGGTCTGG GATCGCAACG CGCCTCTGCC GATGGAAACC
ACCCGCGTGG TGGACTGGGA GGAGGCCCGC GCAACCGTGA TGGAGGCCTA TGAGGCCTTT
GATCCACGCA TGGGCGAGCT GGCGCAGCCG TTTTTCGACA AGGGCTGGAT CGACGCAGGC
GTCAAACCCG GCAAAGCCCC CGGTGCATTT GCTCATCCAA CAGTGACCAA TGTCCATCCG
TATGTGATGC TGAACTACCT GGGCAAACCG CGTGACGTGA TGACGCTGGC GCATGAACTT
GGCCACGGTG TTCATCAGGT TCTTGCCGCA GATCAGGGCG AGATGCTCTC TTCGACACCC
CTGACCCTTG CGGAAACCGC ATCGGTCTTT GGCGAGATGC TCACTTTCCG CAAGATGCTC
GAAAAGGCCC AGACCAAAGA AGAGCGCAAG GTGCTCTTGG CAGGCAAGGT CGAGGACATG
ATCAACACGG TCGTGCGCCA GATCGCCTTT TATGACTTTG AGTGCAAACT ACACGCCGCA
CGCGCCGAAG GTGAGCTTAC GCCCGAAGAC ATCAACGCCC TCTGGATGAG TGTGCAAGCG
GAGTCCCTGG GCGAGTCCTT TGACTTCATG GAAGGGTATG AGACCTTCTG GGCCTATATT
CCGCACTTCG TCCACTCGCC CTTCTACGTC TATGCCTATG CATTTGGCGA TGGCCTCGTG
AACGCGCTTT ACTCGGTCTA TGCCGAAGGG GCCGAGGGAT TTGAGGACAA GTATTTCGAC
ATGCTCAAGG CTGGCGGGTC CAAACATCAC AAAGAGCTTT TGGCACCATT TGGTCTTGAT
GCCTCTGACC CCAAGTTCTG GGACAAAGGC CTGTCGATGA TCTCTGGCCT GATTGACGAG
CTTGAGGCAA TGGAAGCTTG A
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| Protein sequence | MFQLPFPVRD ANASSGAGDL GKLPEWDLSD LYAGEDAAEL SRDLDWLQGE CAAFAADYEG
KLAELDAEGL LTCVHRNEKI NNIAGRIMSY AGLRYYQLTT DADRAKFLSD VQEKVTVFTT
PLVFFTLEIN RIEDAKLDAL FEANADLARY KPVFDRIRAM KPYQLSDELE RFMHDLGIVG
DAWEKLFDET IAGLTFEIEG EELGIEATLN FLTEQDRSKR EAAARELARV FADNIKIFAR
VHNTQAKEKE IIDRWRGMPS PQMGRHLSND VEPEVVEALR EAVVAAYPKL SHRYYELKRK
WLGLDRMQVW DRNAPLPMET TRVVDWEEAR ATVMEAYEAF DPRMGELAQP FFDKGWIDAG
VKPGKAPGAF AHPTVTNVHP YVMLNYLGKP RDVMTLAHEL GHGVHQVLAA DQGEMLSSTP
LTLAETASVF GEMLTFRKML EKAQTKEERK VLLAGKVEDM INTVVRQIAF YDFECKLHAA
RAEGELTPED INALWMSVQA ESLGESFDFM EGYETFWAYI PHFVHSPFYV YAYAFGDGLV
NALYSVYAEG AEGFEDKYFD MLKAGGSKHH KELLAPFGLD ASDPKFWDKG LSMISGLIDE
LEAMEA
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