| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0564 |
|---|
| Symbol | |
|---|
| ID | 4077915 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ruegeria sp. TM1040 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_008044 |
|---|
| Strand | - |
|---|
| Start bp | 600959 |
|---|
| End bp | 602131 |
|---|
| Gene Length | 1173 bp |
|---|
| Protein Length | 390 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 638005861 |
|---|
| Product | peptidase M19, renal dipeptidase |
|---|
| Protein accession | YP_612559 |
|---|
| Protein GI | 99080405 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG2355] Zn-dependent dipeptidase, microsomal dipeptidase homolog |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.0752699 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCCAGCCT TTGCAAGATG GATCAAACGC CTCGTGGGTC TCGCCATATG TGCGATTATG
GCGTTTTTTA TCTTCGCTCC GGCGGCTCTC GACCGCCAGC GCAACCCCGT TGCAGAGCAT
GACTCTTATC CGATCAGCGA CGCAGCACGT GACCTGCACC AAAGCCTCAT CATCGGCGAT
CTGCACGCAG ACCCGCTGCT GTGGAAACGT GACCTGACCA AGCGCAACGC GCGCGGCCAT
GTGGACATCC CCCGGCTGAT CGAGGGCAAT GTCACCTTGC AGGTCTTCAC CGCTGTGACC
AAATCCCCCG CCGGGCAGAA CTATGACCAT AATGATGCGG ATGCGCGGGA CAACATCACG
CTGCTTGCGA TCGGTCAGCT TTGGCCCCTT CCCACCTGGA CGTCGCTCTA TGAACGCGCC
CTGCATCAAG CCGAGAAGTT GCACCGGTTC CAGGAACGCT CCGAAGGGCG GCTGCGTATC
ATTCGTACTG AGGCCGATCT CGACATTCTG CTGGAGCGCA AACGCGCAGG TCACGAAGTC
GTCGGTGGGC TTTTGGGCAT CGAGGGCGCA CACCCGCTGG AGGGCGACAT CAGTAAACTG
CAAGGCCTAG AGGAGGCCGG ATACCGCCTG ATCGCGCTGC AGCATTTCTT TGACAATGCG
CTTGGGGGTT CGTTGCATGG CGCAGGCGAT CTGGGTCTCT CGGCGTTTGG GCGCGACGTG
GTTTCGGAGT CGGTTGATCG CGGCTTGATC CTGGATCTTG CACATTCCAG CCCGCAGGTG
GTGCGGGATG TCATTGCGAT GACCGATGTC CCGTTGGTTC TGTCGCACAC CGGCATCCAC
AAGGCCTGCC CCGTAAAGCG AAACCTACCG GACGCCCTGA TGCGCGACAT CGCCGCTACG
GGCGGGGTGA TCGGAATTGG CTACTGGGCA GATGCCGTGT GTGATGCCTC CCCCAGTGGG
ATCGCCCGTG CCATTCACAG CGCCATCGAG GTGGTTGGAG AAAACCACGT TGCCCTTGGT
TCAGACTTTG ACGGCTCTGT TGCGACGACT TTCGACAGCT CCGAACTTGC TGCGCTAACC
CAGGCCATGC TCGATGAGGG GCTGAGCGAG ACCCAAATCC GCAAAGTCGC CGGGGAGAAC
ATGTTGCGCG TCCTGCGCGC ACGCCTCGAC TGA
|
|---|
| Protein sequence | MPAFARWIKR LVGLAICAIM AFFIFAPAAL DRQRNPVAEH DSYPISDAAR DLHQSLIIGD
LHADPLLWKR DLTKRNARGH VDIPRLIEGN VTLQVFTAVT KSPAGQNYDH NDADARDNIT
LLAIGQLWPL PTWTSLYERA LHQAEKLHRF QERSEGRLRI IRTEADLDIL LERKRAGHEV
VGGLLGIEGA HPLEGDISKL QGLEEAGYRL IALQHFFDNA LGGSLHGAGD LGLSAFGRDV
VSESVDRGLI LDLAHSSPQV VRDVIAMTDV PLVLSHTGIH KACPVKRNLP DALMRDIAAT
GGVIGIGYWA DAVCDASPSG IARAIHSAIE VVGENHVALG SDFDGSVATT FDSSELAALT
QAMLDEGLSE TQIRKVAGEN MLRVLRARLD
|
|---|
| |