Gene TM1040_0480 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagTM1040_0480 
Symbol 
ID4078518 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRuegeria sp. TM1040 
KingdomBacteria 
Replicon accessionNC_008044 
Strand
Start bp501938 
End bp502924 
Gene Length987 bp 
Protein Length328 aa 
Translation table11 
GC content63% 
IMG OID638005776 
Productglycolate reductase 
Protein accessionYP_612475 
Protein GI99080321 
COG category[R] General function prediction only
[H] Coenzyme transport and metabolism
[C] Energy production and conversion 
COG ID[COG1052] Lactate dehydrogenase and related dehydrogenases 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones18 
Plasmid unclonability p-value0.330194 
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.55388 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
GTGCCCAGAG AACGCCTGAG TGTTGTTGTT ACGCGACGGT TGCCAGAGCC GGTGGAAACC 
CGCCTGAGCG AATTGTTCGA CGTGCGGTTG CGCACCGACG ACACCCCAAT GACCCGCACA
GAGCTGGCCG CCGCCATGAA AGAGGCGGAT GTGCTGGTAC CGACGGTCAC CGACACGATT
GACGCAGGCC TTCTGGGGCA GGCGGGCGAG CGGCTGCGGC TGATCGCCAA TTATGGCGCG
GGTGTCGACA ATATCGACGT GGCCACTGCG CGCCAACGGG GCATTCTGGT CTCCAACACC
CCCGGCGTGC TGACCGACGA CACGGCCGAT ATGACGATGG CGCTGATCAT GGCTGTCGTG
CGCCGCATTC CCGAGGGTCT TGCGATCATG CAGCGCGGCG ATTGGGAGGG CTGGTCGCCC
ACGGCCATGC TTGGCGGGCG TCTTGCAGGG CGCCGACTTG GCATTCTGGG CATGGGCCGC
ATCGGTCAGG CCGTCGCACG CCGTGCCCGC GCTTTTGGCA TGCAGGTGCA TTACAACAAT
CGCCGGCGCC TGCGTCCCGA GGTCGAGGAA GAGCTCGAAG CAACATGGTG GGAAAGCCTT
GATCAGATGG TGGCCCGCAT GGATGTGATT TCGATCCACT GTCCCTCGAC GCCTTCGACC
TTTCACTTGA TGAACGCGCG GCGCCTGAAG CTGCTGAAGC CCGATGCGGT GATCGTCAAC
ACCTCGCGCG GGGAGGTGAT CGACGAAAAC GCTCTGACGC GCGGCCTGCG CGCGGGCGAA
ATCGCGGGCT GTGGGCTTGA TGTCTACGAA CATGGTACCA CCGTTAATCC GCGCCTGCGC
GAGCTGCCCA ATGTGGTGCT CCTGCCTCAT ATGGGGTCTG CTACGATCGA GGGGCGGATC
GAAATGGGCG AGAAGGTTCT ATTGAATATC AAGACATTTG AAGATGGGCA TCGCCCACCG
GATCAGGTGG TGCCTGCCAT GTTGTAA
 
Protein sequence
MPRERLSVVV TRRLPEPVET RLSELFDVRL RTDDTPMTRT ELAAAMKEAD VLVPTVTDTI 
DAGLLGQAGE RLRLIANYGA GVDNIDVATA RQRGILVSNT PGVLTDDTAD MTMALIMAVV
RRIPEGLAIM QRGDWEGWSP TAMLGGRLAG RRLGILGMGR IGQAVARRAR AFGMQVHYNN
RRRLRPEVEE ELEATWWESL DQMVARMDVI SIHCPSTPST FHLMNARRLK LLKPDAVIVN
TSRGEVIDEN ALTRGLRAGE IAGCGLDVYE HGTTVNPRLR ELPNVVLLPH MGSATIEGRI
EMGEKVLLNI KTFEDGHRPP DQVVPAML