Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | TM1040_0436 |
Symbol | |
ID | 4076079 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ruegeria sp. TM1040 |
Kingdom | Bacteria |
Replicon accession | NC_008044 |
Strand | - |
Start bp | 452191 |
End bp | 453096 |
Gene Length | 906 bp |
Protein Length | 301 aa |
Translation table | 11 |
GC content | 63% |
IMG OID | 638005732 |
Product | PaaX-like |
Protein accession | YP_612431 |
Protein GI | 99080277 |
COG category | [K] Transcription |
COG ID | [COG3327] Phenylacetic acid-responsive transcriptional repressor |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 30 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 15 |
Fosmid unclonability p-value | 0.581976 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGGCAGTTG GGCTGGCGCT AACCCGCGCC AGCCCTTATC GTATCTGCAT GACACAACAC ACCGACGACT GGTTTACCAC TGCAATCACG GCGCTCACTG AACCGGATGG CCTGAGGGTC TGGTCCATCA TCGTGTCCTT CCTCGGAGAT ATGGCGCAAG ACAAAGGCGC CGGCGTCAGC AGTGCTGCCT TGACGCGGGT TATTACTCCG CTTGGCATCA AACCAGAGGC CATTCGGGTT GCGCTGCACC GTTTGCGTAA GGATGGCTGG ACCGAGAGCC AGCGACGCGG GCGGGGCTCC TTTCATTTCC TGACTCCCTT TGGGCGGCAG CAATCCGCGT TGGTGACCCC CCGTATCTAC GCGCGCAGCA CATGTGAAAC AGACGCCTGG ACCTTGCTTG TTGCGGGCAC GCCAGACGGG CTGGAGACGC TGGATGCGCT CTGCGACCAG ACGCCACTAA CCAGCATCCG GGTCAATCGC CACGCCGCGA TCACACCGGG CCCTGCCATG CAGCACGCCG CAGAGACCTC GCACATGCTG GTTGCAAATC TCGATGTGGC GCATGTGCCC GGCTGGCTAC AGGACGATCT CTTTCCAGAA CCATTGCGGC AGAGCTGCGC GGCTCTTGAC CAGGCCCTTG CGCCCCTCGG GAGCCCACCA GACCTCTCTC CCTTGCAACG CGCCTGCCTG CGCACGCTCC TCGTCCATCG CTGGCGCCGG ATTACGCTCC GACACCCGGA CGTGCCACGC ATATTTCACC CCGCAGATTG GAGCGGAGAA TCCTGTCGCA CGCGGGTCTT TGCCCTGCTC GACAAGTTGC CGCAGCCCGA ACTGGCAGAA ATCGAAGACG CTGCCCCTGT GGCCGTACAA GCTGCGCCCC AAGGCACAAT CGCCGTAACT GGCTGA
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Protein sequence | MAVGLALTRA SPYRICMTQH TDDWFTTAIT ALTEPDGLRV WSIIVSFLGD MAQDKGAGVS SAALTRVITP LGIKPEAIRV ALHRLRKDGW TESQRRGRGS FHFLTPFGRQ QSALVTPRIY ARSTCETDAW TLLVAGTPDG LETLDALCDQ TPLTSIRVNR HAAITPGPAM QHAAETSHML VANLDVAHVP GWLQDDLFPE PLRQSCAALD QALAPLGSPP DLSPLQRACL RTLLVHRWRR ITLRHPDVPR IFHPADWSGE SCRTRVFALL DKLPQPELAE IEDAAPVAVQ AAPQGTIAVT G
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