| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0418 |
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| Symbol | |
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| ID | 4076178 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | + |
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| Start bp | 428354 |
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| End bp | 430087 |
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| Gene Length | 1734 bp |
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| Protein Length | 577 aa |
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| Translation table | 11 |
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| GC content | 59% |
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| IMG OID | 638005713 |
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| Product | alpha amylase, catalytic region |
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| Protein accession | YP_612413 |
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| Protein GI | 99080259 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 0.537622 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.197095 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCACAT CCTTTGCTGC ACGCCTGTCG CAACTGCTGA CCCAAATCTA TCCGGATTTG
GACACGGAGA TCCTTGGCTC CAAAGTGGTT GAGGCGTTTT GGCCCGAAGG CAGTCACCGG
CGCAAGCGCC CGCGCAGGCC TGGAAATTCT CTTTGGTCAG AACGCGACGC ATTGCTGATC
ACCTATGGCA ACACCATGCG TGATGGGGCG CATAAGCCGT TAGACCTGCT GCATGATTTC
CTGCTGACTT ATATGAAGGG TGTTGTGAAT GGCGTGCATA TCCTGCCGTT TTTTCCCTTC
ACTTCGGACG ACGGGTTTGC CGTCACGGAC TATCGCAAGG TGAATCCTGA GCTGGGTGAT
TGGGCCGACA TTCGCCGGAT CGGCGGCGCG TTTCACCTGA TGTCTGACAT GGTGCTCAAC
CATGTGTCCT CGCAGAGCGC CTGGTTCAAC GCCTACCGGC AGGGGCAGCC GCCTTATGAC
CGCTTCTTCT ACGAGGCTTC GCCCTCGGAC GATCTGAGCG CAGTGGTGCG TCCACGCACA
ACGCCGCTGC TGCAGGAGGT AGAGACAGCC ACGGGCGCGA AACATGTGTG GTGCACCTTC
AGCCACGATC AGGTTGATCT CAATTTTGAG AACCCGGAGG TCCTGCTGGA AATCCTTCGG
ATCATTCGCC TGCATATCGA TCAGGGGGTC CGCATTATCC GGCTCGATGC GGTGGCCTTT
ATATGGAAAG AGGTTGGGAC CAGTTCGATC CACCTGCCGC AAACCCATGC GATTGTACAG
CTGCTGCGCC TGCTGGCAGA TTATGCGACC GAGACGGTGG TACTGCTGAC CGAGACCAAC
GTGCCGCGGG CTGAGAATCT CAGCTACTTT GGCAATCGCA ACGAGGCCCA TGTGGTCTAT
AATTTTCCGC TGCCGCCATT GATCCTGCAC GCGATGATGG CGGGCTCGGC GCGCTACCTG
CTGAATTGGG CACGGGCGAT GCCGCCGGCG CCCCTGGGAT GCGCCTATTT GAATTTCACC
GCGAGCCACG ATGGAATCGG GATGCGCCCG GCGGAGGGGG TGTTGCCGCA GGAGGAAATC
GACCAGATGA TCGCCTGCGT GCGGGCGGTA GGGGGTCTTG TGTCCATGCG GGCCTTGCCG
GGGGGTGGTG AAGCGCCCTA CGAGGTGAAC TGCACCTATT TTGACGCGCT TGGCCGAACC
TTTGACAGGG GCGAAGCGCG AAAGGTGGAT CGATTCATCT GTGCGCAGAC CATTCCCATG
AGCCTTGAGG GAATTCCGGC GTTTTACATT CACGCGATGC TGGCGACGGC CAATGATCAT
GATGCGGTGG CGCGGCGCGG TATGAACCGG GCGATCAACC GCCACCGGTG GGATTACGGC
GAGCTGAAGG CGCGTCTGAA TGACGCGGAC AGCGCGCAGG CTCAGGTGAT GTCGGCGCTC
TCCGAACGGC TGCGGGTCCG GGCCGAGCAG CCGGCGTTTC ACCCCAATGC TACCCAGTTC
ACTTTGCAGC TGGATGATCG TGTCTTTGCG CTCTGGCGGC AGTCGCTGGA CCGGGCGCAG
TCGATCTTTG CGCTGCACAA TGTCAGCGGA GATGGGGTGA TCCTGCATCC CGGCGCGCTG
AACCTTATTG AAGGTGAGAC ATGGCGGGAT CTGTTGTCCG GTGACATGTT TGAAAGCGAT
GCAGAGATCA CACTGGCACC CTATCAATGC CGTTGGATCA CCAATCAGGC TTGA
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| Protein sequence | MATSFAARLS QLLTQIYPDL DTEILGSKVV EAFWPEGSHR RKRPRRPGNS LWSERDALLI
TYGNTMRDGA HKPLDLLHDF LLTYMKGVVN GVHILPFFPF TSDDGFAVTD YRKVNPELGD
WADIRRIGGA FHLMSDMVLN HVSSQSAWFN AYRQGQPPYD RFFYEASPSD DLSAVVRPRT
TPLLQEVETA TGAKHVWCTF SHDQVDLNFE NPEVLLEILR IIRLHIDQGV RIIRLDAVAF
IWKEVGTSSI HLPQTHAIVQ LLRLLADYAT ETVVLLTETN VPRAENLSYF GNRNEAHVVY
NFPLPPLILH AMMAGSARYL LNWARAMPPA PLGCAYLNFT ASHDGIGMRP AEGVLPQEEI
DQMIACVRAV GGLVSMRALP GGGEAPYEVN CTYFDALGRT FDRGEARKVD RFICAQTIPM
SLEGIPAFYI HAMLATANDH DAVARRGMNR AINRHRWDYG ELKARLNDAD SAQAQVMSAL
SERLRVRAEQ PAFHPNATQF TLQLDDRVFA LWRQSLDRAQ SIFALHNVSG DGVILHPGAL
NLIEGETWRD LLSGDMFESD AEITLAPYQC RWITNQA
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