| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | TM1040_0408 |
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| Symbol | |
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| ID | 4078802 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ruegeria sp. TM1040 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_008044 |
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| Strand | - |
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| Start bp | 419138 |
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| End bp | 419860 |
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| Gene Length | 723 bp |
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| Protein Length | 240 aa |
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| Translation table | 11 |
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| GC content | 60% |
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| IMG OID | 638005703 |
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| Product | short-chain dehydrogenase/reductase SDR |
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| Protein accession | YP_612403 |
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| Protein GI | 99080249 |
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| COG category | [R] General function prediction only |
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| COG ID | [COG0300] Short-chain dehydrogenases of various substrate specificities |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 23 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCTTCA AAAATCAAAC ATGGTGGATC ATCGGCGCGA GCGAGGGTCT TGGGCGCGCA
TTGGCCGAAG CCCTCGACCA AGAAGGCGCA TCCTTGATCC TGTCTGCACG CAACGCAGAC
CGTCTGCAGG CGCTTTCTGA CGGGCTCGGT GATGCGCAAG CCCTGCCTAT GGATGTCACC
GATTCGCGCT CGGTTGCGAG TGCCGCCGAA GCCGCCTCTG ATGCTGACGG GGTGATCTAT
TGTGCCGGTC TGTACGACCC GATGACAGTA CAGGAATGGG AACCCGAAAC CGCAGAGGCC
ATCTGCGAAG TCAATTTCAT GGGCGCAATG CGCGCCATGG GACGGGTGGC CCCACGGTTC
GCCAGACGCG GGCATGGGCA TATTGTGTTG ATTGGCTCGC TCGCGGGGTT CACCGGGCTT
CCGGGGGCAA TCGGCTATGG CGCCTCCAAG GCGGCAGTGA TGCATCTGGG CGAGAACCTG
CACCGCGATC TGCGCGACAG CGGCGTGAAA GTACAGGTGG TCAATCCAGG CTTTATCAAG
ACCCGGCTTA CGGCCAAGAA TGACTTCAAG ATGCCGATGA TCCAGACCCC CGAAGATGCC
GCTGCCTGCT GCATCAAGGC GATGCGCTCA AATCGGTTCC AGACTTCTTT TCCCGCGCCG
TTTTCGTGGG TGTTTCGCAT CGCTGCACTC CTGCCCCGCA AATTGGTAAC GAGGTTGATA
TGA
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| Protein sequence | MSFKNQTWWI IGASEGLGRA LAEALDQEGA SLILSARNAD RLQALSDGLG DAQALPMDVT
DSRSVASAAE AASDADGVIY CAGLYDPMTV QEWEPETAEA ICEVNFMGAM RAMGRVAPRF
ARRGHGHIVL IGSLAGFTGL PGAIGYGASK AAVMHLGENL HRDLRDSGVK VQVVNPGFIK
TRLTAKNDFK MPMIQTPEDA AACCIKAMRS NRFQTSFPAP FSWVFRIAAL LPRKLVTRLI
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